Atomistry » Calcium » PDB 5tvq-5ufe » 5ue1
Atomistry »
  Calcium »
    PDB 5tvq-5ufe »
      5ue1 »

Calcium in PDB 5ue1: Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114

Enzymatic activity of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114

All present enzymatic activity of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114:
3.2.2.9;

Protein crystallography data

The structure of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114, PDB code: 5ue1 was solved by E.V.Filippova, G.Minasov, L.Shuvalova, O.Kiryukhina, I.Dubrovska, S.Grimshaw, W.F.Anderson, Center For Structural Genomics Of Infectiousdiseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.14
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.642, 72.915, 57.563, 90.00, 109.60, 90.00
R / Rfree (%) 12.9 / 15.8

Other elements in 5ue1:

The structure of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114 also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114 (pdb code 5ue1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114, PDB code: 5ue1:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 5ue1

Go back to Calcium Binding Sites List in 5ue1
Calcium binding site 1 out of 4 in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:13.1
occ:0.80
 O A:ASN-1 2.3 20.8 1.0
O A:HOH597 2.4 20.6 1.0
C A:ASN-1 3.5 23.1 1.0
N A:ALA0 4.4 19.1 1.0
N A:ASN-1 4.4 41.4 1.0
CA A:ALA0 4.4 16.7 1.0
CA A:ASN-1 4.5 30.1 1.0
CB A:ALA0 4.8 18.8 1.0
O A:HOH573 4.8 19.6 1.0

Calcium binding site 2 out of 4 in 5ue1

Go back to Calcium Binding Sites List in 5ue1
Calcium binding site 2 out of 4 in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca304

b:13.9
occ:0.50
 CA A:CA304 0.0 13.9 0.5
CA A:CA304 1.2 21.3 0.5
O A:ASP18 2.3 15.6 1.0
O A:HOH559 2.4 24.9 1.0
O A:HOH457 3.2 29.6 1.0
C A:ASP18 3.4 12.7 1.0
O A:HOH647 3.5 35.5 1.0
CA A:ASP18 4.0 13.3 1.0
N A:LYS19 4.4 12.0 0.5
N A:LYS19 4.4 12.5 0.5
CB A:ASP18 4.4 16.6 1.0
O A:ILE20 4.5 14.9 1.0
CA A:LYS19 4.6 12.3 0.5
CA A:LYS19 4.6 13.1 0.5
O A:HOH492 4.6 36.4 1.0
C A:LYS19 4.9 12.1 0.5
O A:HOH542 4.9 21.9 0.5
OD1 A:ASP18 4.9 25.0 1.0
C A:LYS19 5.0 12.9 0.5
OE2 A:GLU21 5.0 31.1 0.5

Calcium binding site 3 out of 4 in 5ue1

Go back to Calcium Binding Sites List in 5ue1
Calcium binding site 3 out of 4 in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca304

b:21.3
occ:0.50
 CA A:CA304 0.0 21.3 0.5
CA A:CA304 1.2 13.9 0.5
O A:HOH559 2.3 24.9 1.0
O A:ASP18 2.4 15.6 1.0
O A:HOH647 2.4 35.5 1.0
C A:ASP18 3.6 12.7 1.0
O A:HOH542 4.1 21.9 0.5
O A:HOH457 4.1 29.6 1.0
CA A:LYS19 4.4 12.3 0.5
CA A:LYS19 4.4 13.1 0.5
N A:LYS19 4.4 12.0 0.5
N A:LYS19 4.4 12.5 0.5
O A:HOH688 4.5 38.4 1.0
OE2 A:GLU21 4.5 31.1 0.5
CA A:ASP18 4.6 13.3 1.0
C A:LYS19 4.7 12.1 0.5
C A:LYS19 4.8 12.9 0.5
CB A:ASP18 4.9 16.6 1.0
O A:ILE20 4.9 14.9 1.0
O A:LYS19 5.0 13.0 0.5
O A:HOH542 5.0 20.1 0.5

Calcium binding site 4 out of 4 in 5ue1

Go back to Calcium Binding Sites List in 5ue1
Calcium binding site 4 out of 4 in the Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase in Complex with Adenine From Vibrio Fischeri ES114 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca305

b:13.2
occ:0.80
 O A:MET206 2.3 16.1 1.0
O A:HOH598 2.4 19.2 1.0
O A:HOH609 2.4 20.8 1.0
OD1 A:ASP209 2.4 20.4 1.0
OE1 A:GLU210 2.4 17.5 1.0
OE2 A:GLU210 2.5 20.0 1.0
OD2 A:ASP209 2.6 24.2 1.0
CD A:GLU210 2.8 15.1 1.0
CG A:ASP209 2.9 17.5 1.0
C A:MET206 3.5 13.0 1.0
O A:HOH645 4.2 33.2 1.0
CG A:GLU210 4.3 15.9 1.0
O A:HOH649 4.4 24.9 1.0
CA A:MET206 4.4 15.4 1.0
CB A:ASP209 4.4 15.0 1.0
N A:SER207 4.4 12.7 1.0
CA A:SER207 4.5 12.8 1.0
O A:HOH419 4.6 28.8 1.0
O A:HOH418 4.7 25.2 1.0
N A:GLU210 4.8 11.2 1.0
O A:HOH575 4.8 29.9 1.0
CB A:MET206 4.8 23.2 1.0
N A:ASP209 5.0 12.4 1.0
C A:SER207 5.0 12.2 1.0
O A:HOH687 5.0 30.6 1.0
CG A:MET206 5.0 50.5 1.0

Reference:

E.V.Filippova, G.Minasov, L.Shuvalova, O.Kiryukhina, I.Dubrovska, S.Grimshaw, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase From Vibrio Fischeri ES114 To Be Published.
Page generated: Wed Jul 9 10:28:14 2025

Last articles

Mo in 3NVV
Mo in 3NS1
Mo in 3MIN
Mo in 3NRZ
Mo in 3K7R
Mo in 3ML1
Mo in 3K6X
Mo in 3L4P
Mo in 3K1A
Mo in 3K6W
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy