Atomistry » Calcium » PDB 5ufq-5uw6 » 5ufq
Atomistry »
  Calcium »
    PDB 5ufq-5uw6 »
      5ufq »

Calcium in PDB 5ufq: K-RASG12D(Gnp)/R11.1.6 Complex

Protein crystallography data

The structure of K-RASG12D(Gnp)/R11.1.6 Complex, PDB code: 5ufq was solved by J.A.Parker, C.Mattos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.17 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.717, 42.707, 100.235, 90.00, 113.33, 90.00
R / Rfree (%) 20 / 26.3

Other elements in 5ufq:

The structure of K-RASG12D(Gnp)/R11.1.6 Complex also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Cadmium (Cd) 2 atoms
Chlorine (Cl) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the K-RASG12D(Gnp)/R11.1.6 Complex (pdb code 5ufq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the K-RASG12D(Gnp)/R11.1.6 Complex, PDB code: 5ufq:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5ufq

Go back to Calcium Binding Sites List in 5ufq
Calcium binding site 1 out of 2 in the K-RASG12D(Gnp)/R11.1.6 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of K-RASG12D(Gnp)/R11.1.6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca205

b:53.9
occ:1.00
O A:GLU3 2.2 50.1 1.0
OE1 A:GLU76 2.4 55.8 1.0
CL A:CL203 2.5 61.1 1.0
OE2 A:GLU76 3.1 43.8 1.0
CD A:GLU76 3.1 54.0 1.0
C A:GLU3 3.4 44.4 1.0
CE A:LYS5 3.5 55.5 1.0
NZ A:LYS5 3.7 59.4 1.0
CG A:LYS5 3.9 41.3 1.0
CA A:GLU3 4.2 38.9 1.0
CD A:LYS5 4.2 45.1 1.0
CB A:GLU3 4.2 42.7 1.0
N A:GLU3 4.2 42.8 1.0
N A:TYR4 4.3 42.1 1.0
CA A:TYR4 4.4 36.0 1.0
N A:LYS5 4.5 38.8 1.0
CG A:GLU76 4.6 47.1 1.0
C A:TYR4 4.9 35.2 1.0

Calcium binding site 2 out of 2 in 5ufq

Go back to Calcium Binding Sites List in 5ufq
Calcium binding site 2 out of 2 in the K-RASG12D(Gnp)/R11.1.6 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of K-RASG12D(Gnp)/R11.1.6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca204

b:51.5
occ:1.00
O B:GLU3 2.3 45.8 1.0
OE1 B:GLU76 2.7 51.0 1.0
NZ B:LYS5 2.7 49.0 1.0
CL B:CL203 2.8 59.7 1.0
OE2 B:GLU76 3.1 37.2 1.0
C B:GLU3 3.2 45.6 1.0
CD B:GLU76 3.3 45.0 1.0
CB B:GLU3 3.8 43.6 1.0
CA B:GLU3 3.9 47.0 1.0
CE B:LYS5 3.9 50.7 1.0
N B:GLU3 4.1 48.2 1.0
N B:TYR4 4.1 37.5 1.0
CG B:LYS5 4.1 42.8 1.0
CD B:LYS5 4.2 43.8 1.0
CA B:TYR4 4.3 41.5 1.0
N B:LYS5 4.4 34.9 1.0
C B:TYR4 4.7 36.6 1.0
CG B:GLU76 4.8 34.1 1.0
CG B:GLU3 5.0 54.8 1.0

Reference:

M.J.Kauke, M.W.Traxlmayr, J.A.Parker, J.D.Kiefer, R.Knihtila, J.Mcgee, G.Verdine, C.Mattos, K.D.Wittrup. An Engineered Protein Antagonist of K-Ras/B-Raf Interaction. Sci Rep V. 7 5831 2017.
ISSN: ESSN 2045-2322
PubMed: 28724936
DOI: 10.1038/S41598-017-05889-7
Page generated: Mon Jul 15 12:03:09 2024

Last articles

Ba in 5FK5
Ba in 5FK4
Ba in 5FK3
Ba in 5FJC
Ba in 5FK2
Ba in 5FK1
Ba in 4Y1I
Ba in 5EBI
Ba in 5E1J
Ba in 5EW7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy