Calcium in PDB 5up7: Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant

All present enzymatic activity of Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant:
1.16.3.1;

The structure of Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant, PDB code: 5up7 was solved by J.B.Bailey, L.Zhang, J.A.Chiong, S.Ahn, F.A.Tezcan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.01 / 1.79
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.150, 180.150, 180.150, 90.00, 90.00, 90.00
R / Rfree (%)	15.9 / n/a

The structure of Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant also contains other interesting chemical elements:

Nickel	(Ni)	5 atoms
Chlorine	(Cl)	1 atom

The binding sites of Calcium atom in the Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant (pdb code 5up7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant, PDB code: 5up7:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca206 b:23.6 occ:0.50 OD2 A:ASP84 2.1 16.6 1.0 O A:HOH546 2.3 25.6 0.5 OD1 A:ASP84 2.7 10.3 1.0 CG A:ASP84 2.8 10.7 1.0 O A:HOH324 4.2 24.1 0.5 CB A:ASP84 4.2 8.3 1.0 O A:HOH374 4.4 13.6 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Ni-Bound Human Heavy-Chain Ferritin 122H- Delta C-Star Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca207 b:18.3 occ:0.33 OE2 A:GLU134 2.4 16.4 1.0 OD1 A:ASP131 2.6 22.4 1.0 CD A:GLU134 3.6 11.1 1.0 CG A:ASP131 3.7 19.3 1.0 OE1 A:GLU134 4.3 16.0 1.0 CB A:ASP131 4.4 11.8 1.0 CB A:GLU134 4.5 10.6 1.0 O A:HOH328 4.6 27.0 1.0 OD2 A:ASP131 4.6 14.1 1.0 O A:HOH509 4.7 23.6 0.3 CG A:GLU134 4.7 10.4 1.0 CA A:ASP131 4.8 10.3 1.0 O A:HOH543 4.8 25.3 0.3

J.B.Bailey, L.Zhang, J.A.Chiong, S.Ahn, F.A.Tezcan. Synthetic Modularity of Protein-Metal-Organic Frameworks. J. Am. Chem. Soc. V. 139 8160 2017.
ISSN: ESSN 1520-5126
PubMed: 28590729
DOI: 10.1021/JACS.7B01202