Calcium in PDB 5uuy: Crystal Structure of Dioclea Lasiocarpa Lectin (Dll) Complexed with X- Man

The structure of Crystal Structure of Dioclea Lasiocarpa Lectin (Dll) Complexed with X- Man, PDB code: 5uuy was solved by M.Q.Santiago, V.R.Pinto-Junior, V.J.S.Osterne, C.R.C.Rocha, A.H.B.Neco, F.M.P.Fonseca, K.S.Nascimento, B.S.Cavada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.42 / 1.88
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	64.660, 85.980, 93.250, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 26.2

The structure of Crystal Structure of Dioclea Lasiocarpa Lectin (Dll) Complexed with X- Man also contains other interesting chemical elements:

Manganese	(Mn)	1 atom
Bromine	(Br)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Calcium atom in the Crystal Structure of Dioclea Lasiocarpa Lectin (Dll) Complexed with X- Man (pdb code 5uuy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Dioclea Lasiocarpa Lectin (Dll) Complexed with X- Man, PDB code: 5uuy:

Calcium binding site 1 out of 1 in the Crystal Structure of Dioclea Lasiocarpa Lectin (Dll) Complexed with X- Man


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Dioclea Lasiocarpa Lectin (Dll) Complexed with X- Man within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:27.0 occ:1.00 O A:TYR12 2.3 24.5 1.0 OD2 A:ASP19 2.4 28.0 1.0 O A:HOH468 2.4 25.6 1.0 O A:HOH460 2.4 23.6 1.0 OD2 A:ASP10 2.4 22.4 1.0 OD1 A:ASP10 2.5 26.5 1.0 OD1 A:ASN14 2.5 24.7 1.0 CG A:ASP10 2.8 22.5 1.0 CG A:ASP19 3.5 28.4 1.0 C A:TYR12 3.6 29.8 1.0 CG A:ASN14 3.6 30.6 1.0 OD1 A:ASP19 3.9 23.2 1.0 N A:ASN14 4.0 28.1 1.0 MN A:MN301 4.1 35.4 1.0 CB A:ASN14 4.1 30.1 1.0 CB A:ASP10 4.3 23.7 1.0 CA A:TYR12 4.4 26.5 1.0 N A:TYR12 4.5 28.7 1.0 CB A:TYR12 4.5 26.0 1.0 N A:PRO13 4.5 30.9 1.0 O A:HOH444 4.5 22.0 1.0 CE1 A:HIS24 4.5 25.6 1.0 CA A:PRO13 4.6 29.8 1.0 CB A:ARG228 4.6 26.9 1.0 C A:PRO13 4.6 31.7 1.0 CA A:ASN14 4.7 31.5 1.0 O A:ARG228 4.7 23.0 1.0 CB A:ASP19 4.7 30.5 1.0 O A:ASP208 4.7 22.0 1.0 CA A:ARG228 4.8 26.1 1.0 ND2 A:ASN14 4.8 24.6 1.0 OD1 A:ASP208 4.9 30.1 1.0 CD2 A:TYR12 4.9 27.1 1.0 NE2 A:HIS24 5.0 22.4 1.0

K.S.Nascimento, M.Q.Santiago, V.R.Pinto-Junior, V.J.S.Osterne, F.W.V.Martins, A.P.M.Nascimento, I.A.V.Wolin, I.A.Heinrich, M.G.Q.Martins, M.T.L.Silva, C.F.Lossio, C.R.C.Rocha, R.B.Leal, B.S.Cavada. Structural Analysis of Dioclea Lasiocarpa Lectin: A C6 Cells Apoptosis-Inducing Protein. Int. J. Biochem. Cell Biol. V. 92 79 2017.
ISSN: ISSN 1878-5875
PubMed: 28939357
DOI: 10.1016/J.BIOCEL.2017.09.014