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Calcium in PDB 5uzu: Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase

Enzymatic activity of Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase

All present enzymatic activity of Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase:
1.11.2.2;

Protein crystallography data

The structure of Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase, PDB code: 5uzu was solved by N.De Jong, B.V.Geisbrecht, J.Van Strijp, P.Haas, R.Nijland, K.Ramyar, C.Fevre, F.Guerra, J.Voyich-Kane, C.Van Kessel, B.Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.34 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 129.034, 92.944, 80.394, 90.00, 120.14, 90.00
R / Rfree (%) 18.4 / 24.1

Other elements in 5uzu:

The structure of Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase (pdb code 5uzu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase, PDB code: 5uzu:

Calcium binding site 1 out of 1 in 5uzu

Go back to Calcium Binding Sites List in 5uzu
Calcium binding site 1 out of 1 in the Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Immune Evasion By A Staphylococcal Peroxidase Inhibitor That Blocks Myeloperoxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca802

b:38.9
occ:1.00
 O A:ASP262 2.3 33.5 1.0
O A:PHE336 2.3 39.3 1.0
OG A:SER340 2.3 37.1 1.0
OD1 A:ASP262 2.3 41.4 1.0
O A:THR334 2.3 39.0 1.0
OD1 A:ASP338 2.6 41.4 1.0
OG1 A:THR334 2.6 38.1 1.0
CG A:ASP262 3.4 40.0 1.0
CG A:ASP338 3.4 40.5 1.0
C A:ASP262 3.4 34.4 1.0
C A:THR334 3.4 39.2 1.0
C A:PHE336 3.5 38.8 1.0
CB A:SER340 3.5 37.1 1.0
OD2 A:ASP338 3.7 40.4 1.0
N A:ASP338 3.9 38.2 1.0
CB A:THR334 3.9 38.5 1.0
CA A:ASP262 4.1 35.9 1.0
CA A:THR334 4.1 38.8 1.0
N A:PHE336 4.1 40.1 1.0
N A:SER340 4.2 40.0 1.0
OD2 A:ASP262 4.2 40.4 1.0
CB A:ASP262 4.2 37.9 1.0
C A:SER335 4.2 40.5 1.0
N A:THR334 4.3 38.7 1.0
CA A:PHE336 4.4 39.8 1.0
N A:LEU263 4.4 35.1 1.0
O A:SER335 4.5 40.1 1.0
CA A:SER340 4.5 37.9 1.0
N A:VAL337 4.5 37.1 1.0
N A:SER335 4.5 40.0 1.0
CB A:ASP338 4.5 40.4 1.0
CA A:VAL337 4.6 36.2 1.0
CA A:ASP338 4.6 40.5 1.0
CL A:CL803 4.6 58.0 1.0
CA A:LEU263 4.7 36.6 1.0
C A:VAL337 4.7 36.4 1.0
CA A:SER335 4.8 41.0 1.0
N A:ALA339 4.8 42.4 1.0
C A:ASP338 4.9 42.1 1.0
CD2 A:LEU263 4.9 39.0 1.0
CG2 A:THR334 5.0 38.9 1.0
CB A:PHE336 5.0 40.1 1.0

Reference:

N.W.M.De Jong, K.X.Ramyar, F.E.Guerra, R.Nijland, C.Fevre, J.M.Voyich, A.J.Mccarthy, B.L.Garcia, K.P.M.Van Kessel, J.A.G.Van Strijp, B.V.Geisbrecht, P.A.Haas. Immune Evasion By A Staphylococcal Inhibitor of Myeloperoxidase. Proc. Natl. Acad. Sci. V. 114 9439 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28808028
DOI: 10.1073/PNAS.1707032114
Page generated: Mon Jul 15 12:15:21 2024

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