Calcium in PDB 5wcx: Streptococcus Pyogenes Phosphoglycerol Transferase Gach in Complex with Sn-Glycerol-1-Phosphate, Crystal Form 1

The structure of Streptococcus Pyogenes Phosphoglycerol Transferase Gach in Complex with Sn-Glycerol-1-Phosphate, Crystal Form 1, PDB code: 5wcx was solved by R.J.Edgar, N.Korotkova, K.V.Korotkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.43 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.970, 77.530, 174.940, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 21.2

The structure of Streptococcus Pyogenes Phosphoglycerol Transferase Gach in Complex with Sn-Glycerol-1-Phosphate, Crystal Form 1 also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Calcium atom in the Streptococcus Pyogenes Phosphoglycerol Transferase Gach in Complex with Sn-Glycerol-1-Phosphate, Crystal Form 1 (pdb code 5wcx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Streptococcus Pyogenes Phosphoglycerol Transferase Gach in Complex with Sn-Glycerol-1-Phosphate, Crystal Form 1, PDB code: 5wcx:

Calcium binding site 1 out of 1 in the Streptococcus Pyogenes Phosphoglycerol Transferase Gach in Complex with Sn-Glycerol-1-Phosphate, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Streptococcus Pyogenes Phosphoglycerol Transferase Gach in Complex with Sn-Glycerol-1-Phosphate, Crystal Form 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca903 b:69.7 occ:1.00 OD1 A:ASP764 2.2 65.0 1.0 O A:ASP472 2.5 84.4 1.0 CG A:ASP764 3.1 64.2 1.0 OD2 A:ASP764 3.4 66.4 1.0 HB3 A:ASP472 3.5 0.8 1.0 C A:ASP472 3.6 83.3 1.0 HD3 A:ARG473 3.6 67.9 1.0 HA A:ARG473 3.7 74.2 1.0 CB A:ASP472 4.2 85.7 1.0 HB2 A:ASP472 4.4 0.8 1.0 N A:ARG473 4.4 64.0 1.0 CA A:ARG473 4.5 61.9 1.0 CB A:ASP764 4.5 62.4 1.0 CA A:ASP472 4.5 84.4 1.0 HG3 A:LYS474 4.5 0.7 1.0 CD A:ARG473 4.6 56.6 1.0 HE A:ARG473 4.6 64.5 1.0 HB2 A:ASP764 4.6 74.8 1.0 HA A:ASP764 4.7 71.5 1.0 HE3 A:LYS474 4.7 0.6 1.0 HA A:ASP472 4.8 0.3 1.0 H A:LYS474 4.8 89.9 1.0 NE A:ARG473 5.0 53.8 1.0

R.J.Edgar, K.V.Korotkov, N.Korotkova. Phosphoglycerol Transferase Gach From Streptococcus Pyogenes To Be Published.