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Calcium in PDB 5wjh: Using Sound Pulses to Solve the Crystal Harvesting Bottleneck

Enzymatic activity of Using Sound Pulses to Solve the Crystal Harvesting Bottleneck

All present enzymatic activity of Using Sound Pulses to Solve the Crystal Harvesting Bottleneck:
3.4.21.64;

Protein crystallography data

The structure of Using Sound Pulses to Solve the Crystal Harvesting Bottleneck, PDB code: 5wjh was solved by A.S.Soares, H.M.Brennan, L.Mccarthy, L.Leroy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 106.42 / 1.63
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.257, 68.257, 106.417, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 24.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Using Sound Pulses to Solve the Crystal Harvesting Bottleneck (pdb code 5wjh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Using Sound Pulses to Solve the Crystal Harvesting Bottleneck, PDB code: 5wjh:

Calcium binding site 1 out of 1 in 5wjh

Go back to Calcium Binding Sites List in 5wjh
Calcium binding site 1 out of 1 in the Using Sound Pulses to Solve the Crystal Harvesting Bottleneck


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Using Sound Pulses to Solve the Crystal Harvesting Bottleneck within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:15.9
occ:1.00
O A:HOH597 2.3 21.9 1.0
O A:VAL177 2.4 17.5 1.0
O A:PRO175 2.4 16.7 1.0
OD2 A:ASP200 2.5 15.6 1.0
O A:HOH503 2.5 18.7 1.0
O A:HOH647 2.5 24.0 1.0
O A:HOH435 2.6 16.6 1.0
OD1 A:ASP200 2.7 18.6 1.0
CG A:ASP200 2.9 18.8 1.0
C A:PRO175 3.5 15.8 1.0
C A:VAL177 3.6 15.2 1.0
O A:HOH762 3.9 42.3 1.0
O A:HOH649 3.9 35.2 0.5
N A:VAL177 4.2 15.8 1.0
CA A:PRO175 4.2 17.1 1.0
O A:VAL198 4.3 17.6 1.0
O A:HOH805 4.4 28.2 1.0
C A:SER176 4.4 16.1 1.0
CA A:CYS178 4.4 17.6 1.0
CB A:ASP200 4.5 15.9 1.0
N A:SER176 4.5 15.2 1.0
O A:GLU174 4.5 14.0 1.0
N A:CYS178 4.5 14.8 1.0
CA A:VAL177 4.5 14.7 1.0
O A:HOH733 4.6 41.1 1.0
N A:THR179 4.6 15.6 1.0
CA A:SER176 4.7 14.7 1.0
O A:HOH612 4.7 19.2 1.0
OG1 A:THR179 4.8 17.0 1.0
O A:HOH427 4.8 22.8 0.5
SG A:CYS249 4.8 25.6 1.0
O A:HOH763 5.0 39.0 0.5

Reference:

Y.N.Samara, H.M.Brennan, L.Mccarthy, M.T.Bollard, D.Laspina, J.M.Wlodek, S.L.Campos, R.Natarajan, K.Gofron, S.Mcsweeney, A.S.Soares, L.Leroy. Using Sound Pulses to Solve the Crystal-Harvesting Bottleneck. Acta Crystallogr D Struct V. 74 986 2018BIOL.
ISSN: ISSN 2059-7983
PubMed: 30289409
DOI: 10.1107/S2059798318011506
Page generated: Wed Jul 9 11:16:41 2025

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