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Calcium in PDB 5xlu: High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin

Enzymatic activity of High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin

All present enzymatic activity of High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin:
2.3.2.2;

Protein crystallography data

The structure of High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin, PDB code: 5xlu was solved by S.Kumari, M.Goel, R.Gupta, R.Pal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.64 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.005, 85.732, 124.664, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 20.5

Calcium Binding Sites:

The binding sites of Calcium atom in the High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin (pdb code 5xlu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin, PDB code: 5xlu:

Calcium binding site 1 out of 1 in 5xlu

Go back to Calcium Binding Sites List in 5xlu
Calcium binding site 1 out of 1 in the High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca603

b:12.9
occ:1.00
 O B:HOH751 2.3 13.1 1.0
O B:HOH727 2.3 13.2 1.0
O B:HOH827 2.4 14.3 1.0
O B:HOH803 2.4 13.6 1.0
O B:HOH838 2.4 12.7 1.0
OE2 B:GLU523 2.4 12.3 1.0
OE1 B:GLU523 2.5 12.3 1.0
CD B:GLU523 2.8 11.0 1.0
CG B:GLU523 4.2 10.8 1.0
OD1 B:ASP568 4.3 11.8 1.0
O B:ILE548 4.4 12.0 1.0
O B:GLU508 4.5 10.7 1.0
O B:HOH741 4.6 21.2 1.0
O B:ILE507 4.6 11.1 1.0
CZ B:ARG511 4.6 12.5 1.0
O B:HOH742 4.7 18.0 1.0
CB B:GLU523 4.7 10.4 1.0
O B:GLU509 4.7 10.7 1.0
NE B:ARG511 4.7 12.4 1.0
OD2 B:ASP568 4.8 10.9 1.0
OD1 B:ASP547 4.8 14.2 1.0
NH2 B:ARG511 4.9 12.0 1.0
CD B:ARG511 4.9 11.1 1.0
OE1 B:GLU508 4.9 13.0 1.0
NH1 B:ARG511 4.9 13.1 1.0

Reference:

S.Kumari, M.Goel, R.Gupta. High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin To Be Published.
Page generated: Wed Jul 9 11:42:15 2025

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