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Calcium in PDB 6azp: A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin)

Enzymatic activity of A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin)

All present enzymatic activity of A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin):
1.11.2.2;

Protein crystallography data

The structure of A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin), PDB code: 6azp was solved by K.X.Ramyar, B.V.Geisbrecht, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.96 / 2.29
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 128.854, 92.876, 80.460, 90.00, 119.91, 90.00
R / Rfree (%) 17.9 / 22.9

Calcium Binding Sites:

The binding sites of Calcium atom in the A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin) (pdb code 6azp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin), PDB code: 6azp:

Calcium binding site 1 out of 1 in 6azp

Go back to Calcium Binding Sites List in 6azp
Calcium binding site 1 out of 1 in the A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca806

b:32.1
occ:1.00
 OG A:SER340 2.0 32.6 1.0
O A:ASP262 2.2 33.8 1.0
OD1 A:ASP262 2.3 31.9 1.0
O A:PHE336 2.3 35.8 1.0
O A:THR334 2.3 33.8 1.0
OD1 A:ASP338 2.5 29.4 1.0
OG1 A:THR334 2.5 31.2 1.0
C A:THR334 3.3 36.8 1.0
CB A:SER340 3.3 28.3 1.0
CG A:ASP338 3.3 36.8 1.0
C A:ASP262 3.4 25.6 1.0
CG A:ASP262 3.4 34.9 1.0
C A:PHE336 3.5 39.8 1.0
CB A:THR334 3.6 33.1 1.0
OD2 A:ASP338 3.7 38.6 1.0
CA A:THR334 3.9 31.6 1.0
N A:PHE336 3.9 36.5 1.0
N A:ASP338 4.0 32.0 1.0
N A:SER340 4.0 33.1 1.0
CA A:ASP262 4.0 32.3 1.0
CB A:ASP262 4.2 29.4 1.0
N A:THR334 4.2 33.2 1.0
C A:SER335 4.2 39.0 1.0
CA A:PHE336 4.2 34.5 1.0
CA A:SER340 4.3 34.4 1.0
N A:SER335 4.4 29.0 1.0
OD2 A:ASP262 4.4 34.6 1.0
N A:LEU263 4.4 30.1 1.0
N A:VAL337 4.5 35.1 1.0
CB A:ASP338 4.5 31.9 1.0
O A:HOH1027 4.5 24.1 1.0
O A:SER335 4.6 39.2 1.0
CA A:ASP338 4.7 35.4 1.0
CA A:LEU263 4.7 29.6 1.0
CA A:SER335 4.7 39.9 1.0
CA A:VAL337 4.7 34.2 1.0
N A:ALA339 4.8 35.3 1.0
CB A:PHE336 4.8 40.7 1.0
C A:VAL337 4.9 37.1 1.0
CG2 A:THR334 4.9 29.5 1.0
C A:ASP338 4.9 34.3 1.0
CD2 A:LEU263 4.9 34.1 1.0

Reference:

N.W.M.De Jong, N.T.Ploscariu, K.X.Ramyar, B.L.Garcia, A.I.Herrera, O.Prakash, B.B.Katz, K.G.Leidal, W.M.Nauseef, K.P.M.Van Kessel, J.A.G.Van Strijp, B.V.Geisbrecht. A Structurally Dynamic N-Terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (Spin). J. Biol. Chem. V. 293 2260 2018.
ISSN: ESSN 1083-351X
PubMed: 29306874
DOI: 10.1074/JBC.RA117.000134
Page generated: Wed Jul 9 12:35:01 2025

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