Atomistry » Calcium » PDB 6byp-6cl6 » 6c6g
Atomistry »
  Calcium »
    PDB 6byp-6cl6 »
      6c6g »

Calcium in PDB 6c6g: An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.

Enzymatic activity of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.

All present enzymatic activity of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.:
3.5.1.84;

Protein crystallography data

The structure of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex., PDB code: 6c6g was solved by T.S.Peat, L.Esquirol, M.Wilding, J.W.Liu, N.G.French, C.J.Hartley, O.Hideki, C.J.Easton, J.Newman, C.Scott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.91 / 2.10
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.629, 88.909, 141.852, 90.00, 101.32, 90.00
R / Rfree (%) 16.6 / 21

Calcium Binding Sites:

The binding sites of Calcium atom in the An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex. (pdb code 6c6g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex., PDB code: 6c6g:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6c6g

Go back to Calcium Binding Sites List in 6c6g
Calcium binding site 1 out of 2 in the An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:17.9
occ:1.00
 O A:HOH824 3.1 20.8 1.0
ND2 A:ASN172 3.2 10.1 1.0
O A:HOH797 3.2 10.9 1.0
O2 A:SVV174 3.3 12.4 1.0
CD1 A:TYR125 3.6 8.9 1.0
CE1 A:TYR125 3.8 8.9 1.0
CE2 A:PHE202 3.8 11.0 1.0
CZ A:PHE202 4.0 10.9 1.0
CB A:ASN172 4.1 10.3 1.0
CG A:ASN172 4.1 10.8 1.0
CG2 A:THR305 4.1 10.1 1.0
CZ A:PHE127 4.2 11.8 1.0
O A:HOH745 4.2 12.2 1.0
CE2 A:PHE127 4.4 11.7 1.0
P1 A:SVV174 4.4 12.0 1.0
N A:GLY126 4.6 10.5 1.0
O A:ALA124 4.8 9.4 1.0
O3 A:SVV174 4.8 12.8 1.0
N4 A:SVV174 4.8 12.9 1.0
CE1 A:PHE127 4.8 11.7 1.0
CA A:TYR125 4.9 9.7 1.0
CG A:TYR125 4.9 9.2 1.0

Calcium binding site 2 out of 2 in 6c6g

Go back to Calcium Binding Sites List in 6c6g
Calcium binding site 2 out of 2 in the An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:16.9
occ:1.00
 ND2 B:ASN172 3.2 7.5 1.0
O2 B:SVV174 3.2 13.5 1.0
O B:HOH820 3.2 15.9 1.0
O B:HOH812 3.3 11.0 1.0
CD1 B:TYR125 3.7 11.2 1.0
CE1 B:TYR125 3.8 11.1 1.0
CE2 B:PHE202 3.9 11.0 1.0
CB B:ASN172 4.0 8.6 1.0
CG B:ASN172 4.1 8.5 1.0
CZ B:PHE202 4.1 11.2 1.0
CZ B:PHE127 4.1 9.9 1.0
CG2 B:THR305 4.2 9.7 1.0
CE2 B:PHE127 4.3 10.3 1.0
O B:HOH730 4.3 13.9 1.0
P1 B:SVV174 4.4 12.7 1.0
N B:GLY126 4.6 11.2 1.0
N4 B:SVV174 4.7 11.8 1.0
CE1 B:PHE127 4.8 10.3 1.0
O3 B:SVV174 4.8 11.0 1.0
O B:ALA124 4.8 8.9 1.0
CA B:TYR125 4.9 11.2 1.0
CG B:TYR125 5.0 11.8 1.0
CD2 B:PHE127 5.0 10.2 1.0

Reference:

L.Esquirol, T.S.Peat, M.Wilding, J.W.Liu, N.G.French, C.J.Hartley, H.Onagi, T.Nebl, C.J.Easton, J.Newman, C.Scott. An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of Ans-Triazine Catabolic Enzyme. J. Biol. Chem. V. 293 7880 2018.
ISSN: ESSN 1083-351X
PubMed: 29523689
DOI: 10.1074/JBC.RA118.001996
Page generated: Mon Jul 15 17:20:36 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy