Calcium in PDB 6cg0: Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A)

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A):
2.3.2.27;

The structure of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A) (pdb code 6cg0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A), PDB code: 6cg0:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1102 b:77.7 occ:1.00 O A:GLY601 2.5 76.0 1.0 OD2 A:ASP600 2.5 77.5 1.0 OP2 F:DT31 2.5 84.9 1.0 CG A:ASP600 3.5 77.5 1.0 C A:GLY601 3.6 76.0 1.0 P F:DT31 3.7 84.9 1.0 C5' F:DT31 3.8 84.9 1.0 OD1 A:ASP600 3.9 77.5 1.0 OP1 F:DG30 3.9 76.5 1.0 O3' F:DG30 3.9 76.5 1.0 CA A:MET602 4.1 75.8 1.0 O5' F:DT31 4.3 84.9 1.0 N A:MET602 4.3 75.8 1.0 N A:GLY601 4.7 76.0 1.0 C A:MET602 4.7 75.8 1.0 NE2 A:GLN962 4.7 74.3 1.0 CA A:GLY601 4.7 76.0 1.0 CB A:ASP600 4.8 77.5 1.0 OE1 A:GLN962 4.9 74.3 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1102 b:83.7 occ:1.00 O C:GLY601 2.4 76.3 1.0 OP2 G:DT42 2.4 81.6 1.0 OD1 C:ASP600 2.6 77.3 1.0 OD2 C:ASP600 2.6 77.3 1.0 CG C:ASP600 2.9 77.3 1.0 C C:GLY601 3.6 76.3 1.0 P G:DT42 3.8 81.6 1.0 O3' G:DG41 4.0 70.2 1.0 N C:GLY601 4.2 76.3 1.0 C5' G:DT42 4.2 81.6 1.0 O3' J:DA16 4.2 83.9 1.0 CB C:ASP600 4.3 77.3 1.0 CA C:GLY601 4.4 76.3 1.0 O5' G:DT42 4.5 81.6 1.0 N C:MET602 4.6 76.4 1.0 OE1 C:GLN962 4.7 71.1 1.0 CA C:MET602 4.8 76.4 1.0 C C:ASP600 4.8 77.3 1.0 OP1 G:DT42 4.9 81.6 1.0

M.S.Kim, W.Chuenchor, X.Chen, Y.Cui, X.Zhang, Z.H.Zhou, M.Gellert, W.Yang. Cracking the Dna Code For V(D)J Recombination. Mol. Cell V. 70 358 2018.
ISSN: ISSN 1097-4164
PubMed: 29628308
DOI: 10.1016/J.MOLCEL.2018.03.008