Calcium in PDB 6cl6: Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691
Protein crystallography data
The structure of Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691, PDB code: 6cl6
was solved by
S.A.Buth,
M.M.Shneider,
P.G.Leiman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.96 /
1.90
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.320,
126.946,
432.938,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
16 /
20.8
|
Other elements in 6cl6:
The structure of Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691 also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691
(pdb code 6cl6). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the
Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691, PDB code: 6cl6:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
Calcium binding site 1 out
of 6 in 6cl6
Go back to
Calcium Binding Sites List in 6cl6
Calcium binding site 1 out
of 6 in the Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca703
b:20.0
occ:1.00
|
O
|
C:PRO656
|
2.2
|
23.1
|
1.0
|
|
O
|
A:GLY677
|
2.4
|
13.8
|
1.0
|
|
OD1
|
A:ASP628
|
2.4
|
23.9
|
1.0
|
|
O
|
C:HOH1101
|
2.4
|
18.1
|
1.0
|
|
O
|
A:HOH989
|
2.4
|
13.3
|
1.0
|
|
O
|
A:HOH886
|
2.5
|
15.4
|
1.0
|
|
O
|
A:HOH819
|
2.5
|
33.6
|
1.0
|
|
CG
|
A:ASP628
|
3.4
|
28.4
|
1.0
|
|
C
|
C:PRO656
|
3.4
|
20.1
|
1.0
|
|
C
|
A:GLY677
|
3.6
|
14.0
|
1.0
|
|
HB3
|
A:ASP659
|
3.6
|
32.6
|
1.0
|
|
HB3
|
A:PHE679
|
3.6
|
24.9
|
1.0
|
|
HB2
|
C:PRO656
|
3.7
|
35.6
|
1.0
|
|
OD2
|
A:ASP628
|
3.8
|
27.3
|
1.0
|
|
HA2
|
C:GLY657
|
3.8
|
26.7
|
1.0
|
|
HA2
|
A:GLY677
|
4.1
|
17.0
|
1.0
|
|
HG1
|
A:THR658
|
4.1
|
20.4
|
1.0
|
|
HA
|
A:TYR678
|
4.1
|
16.6
|
1.0
|
|
HA
|
C:PRO656
|
4.2
|
23.9
|
1.0
|
|
CA
|
C:PRO656
|
4.3
|
19.9
|
1.0
|
|
N
|
A:PHE679
|
4.3
|
15.6
|
1.0
|
|
O
|
A:ASP659
|
4.4
|
13.4
|
1.0
|
|
CA
|
A:GLY677
|
4.4
|
14.2
|
1.0
|
|
HA
|
A:PHE679
|
4.4
|
21.0
|
1.0
|
|
N
|
C:GLY657
|
4.4
|
20.0
|
1.0
|
|
CB
|
C:PRO656
|
4.4
|
29.6
|
1.0
|
|
C
|
A:TYR678
|
4.4
|
16.6
|
1.0
|
|
O
|
A:HOH1310
|
4.4
|
21.9
|
1.0
|
|
H
|
A:PHE679
|
4.4
|
18.6
|
1.0
|
|
OD2
|
A:ASP659
|
4.4
|
22.6
|
1.0
|
|
CA
|
C:GLY657
|
4.5
|
22.2
|
1.0
|
|
CB
|
A:PHE679
|
4.5
|
20.8
|
1.0
|
|
N
|
A:TYR678
|
4.5
|
16.3
|
1.0
|
|
CB
|
A:ASP659
|
4.5
|
27.1
|
1.0
|
|
HA3
|
A:GLY677
|
4.5
|
17.0
|
1.0
|
|
CA
|
A:TYR678
|
4.6
|
13.8
|
1.0
|
|
HA
|
A:ASP628
|
4.6
|
18.2
|
1.0
|
|
O
|
A:HOH1176
|
4.6
|
29.0
|
1.0
|
|
CB
|
A:ASP628
|
4.6
|
17.9
|
1.0
|
|
CA
|
A:PHE679
|
4.7
|
17.5
|
1.0
|
|
H
|
A:ASP659
|
4.7
|
18.0
|
1.0
|
|
HB3
|
A:ASP628
|
4.7
|
21.5
|
1.0
|
|
OG1
|
A:THR658
|
4.7
|
17.0
|
1.0
|
|
O
|
C:THR658
|
4.8
|
20.7
|
1.0
|
|
H
|
C:THR658
|
4.8
|
34.6
|
1.0
|
|
HB3
|
C:PRO656
|
4.8
|
35.6
|
1.0
|
|
C
|
C:GLY657
|
4.8
|
37.1
|
1.0
|
|
O
|
A:TYR678
|
4.9
|
14.5
|
1.0
|
|
N
|
C:THR658
|
5.0
|
28.8
|
1.0
|
|
CG
|
A:ASP659
|
5.0
|
46.6
|
1.0
|
|
HB2
|
A:PHE679
|
5.0
|
24.9
|
1.0
|
|
Calcium binding site 2 out
of 6 in 6cl6
Go back to
Calcium Binding Sites List in 6cl6
Calcium binding site 2 out
of 6 in the Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca706
b:16.6
occ:1.00
|
O
|
B:GLY677
|
2.2
|
12.8
|
1.0
|
|
O
|
A:PRO656
|
2.3
|
16.5
|
1.0
|
|
O1
|
A:EDO707
|
2.4
|
17.2
|
1.0
|
|
O2
|
A:EDO707
|
2.4
|
20.9
|
1.0
|
|
OD2
|
B:ASP659
|
2.4
|
24.0
|
1.0
|
|
OD1
|
B:ASP628
|
2.5
|
17.5
|
1.0
|
|
O
|
B:HOH895
|
2.5
|
12.5
|
1.0
|
|
C2
|
A:EDO707
|
3.0
|
33.9
|
1.0
|
|
H22
|
A:EDO707
|
3.1
|
40.6
|
1.0
|
|
C1
|
A:EDO707
|
3.2
|
35.2
|
1.0
|
|
CG
|
B:ASP659
|
3.3
|
37.4
|
1.0
|
|
C
|
B:GLY677
|
3.4
|
12.2
|
1.0
|
|
CG
|
B:ASP628
|
3.5
|
22.9
|
1.0
|
|
C
|
A:PRO656
|
3.5
|
19.5
|
1.0
|
|
H11
|
A:EDO707
|
3.6
|
42.2
|
1.0
|
|
OD1
|
B:ASP659
|
3.6
|
42.6
|
1.0
|
|
OD2
|
B:ASP628
|
3.8
|
23.7
|
1.0
|
|
HB2
|
A:PRO656
|
3.8
|
28.4
|
1.0
|
|
HA2
|
A:GLY657
|
3.9
|
25.4
|
1.0
|
|
HA
|
B:PHE679
|
3.9
|
22.1
|
1.0
|
|
HA
|
B:TYR678
|
4.0
|
12.1
|
1.0
|
|
N
|
B:PHE679
|
4.1
|
15.1
|
1.0
|
|
H21
|
A:EDO707
|
4.1
|
40.6
|
1.0
|
|
HB3
|
B:PHE679
|
4.1
|
17.7
|
1.0
|
|
H12
|
A:EDO707
|
4.1
|
42.2
|
1.0
|
|
O
|
B:HOH814
|
4.1
|
26.2
|
1.0
|
|
C
|
B:TYR678
|
4.1
|
15.6
|
1.0
|
|
HA2
|
B:GLY677
|
4.2
|
20.1
|
1.0
|
|
O
|
B:ASP659
|
4.2
|
17.1
|
1.0
|
|
H
|
B:PHE679
|
4.2
|
18.1
|
1.0
|
|
N
|
B:TYR678
|
4.3
|
9.7
|
1.0
|
|
CA
|
B:GLY677
|
4.3
|
16.8
|
1.0
|
|
CA
|
B:TYR678
|
4.3
|
10.0
|
1.0
|
|
HA
|
A:PRO656
|
4.4
|
23.1
|
1.0
|
|
CA
|
A:PRO656
|
4.4
|
19.2
|
1.0
|
|
CA
|
B:PHE679
|
4.4
|
18.4
|
1.0
|
|
N
|
A:GLY657
|
4.5
|
22.3
|
1.0
|
|
HA3
|
B:GLY677
|
4.5
|
20.1
|
1.0
|
|
CB
|
A:PRO656
|
4.5
|
23.6
|
1.0
|
|
CA
|
A:GLY657
|
4.5
|
21.2
|
1.0
|
|
O
|
B:TYR678
|
4.6
|
17.0
|
1.0
|
|
CB
|
B:ASP659
|
4.6
|
19.6
|
1.0
|
|
CB
|
B:PHE679
|
4.7
|
14.8
|
1.0
|
|
HA
|
B:ASP628
|
4.7
|
14.5
|
1.0
|
|
HB2
|
B:ASP659
|
4.8
|
23.6
|
1.0
|
|
CB
|
B:ASP628
|
4.8
|
17.4
|
1.0
|
|
C
|
A:GLY657
|
4.8
|
22.8
|
1.0
|
|
OG1
|
B:THR658
|
4.9
|
18.0
|
1.0
|
|
H
|
B:ASP659
|
4.9
|
17.4
|
1.0
|
|
C
|
B:ASP659
|
4.9
|
22.1
|
1.0
|
|
H
|
A:THR658
|
5.0
|
19.1
|
1.0
|
|
HB2
|
B:PHE679
|
5.0
|
17.7
|
1.0
|
|
HB3
|
A:PRO656
|
5.0
|
28.4
|
1.0
|
|
Calcium binding site 3 out
of 6 in 6cl6
Go back to
Calcium Binding Sites List in 6cl6
Calcium binding site 3 out
of 6 in the Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca704
b:19.4
occ:1.00
|
O
|
C:GLY677
|
2.2
|
19.1
|
1.0
|
|
O
|
B:PRO656
|
2.3
|
18.3
|
1.0
|
|
O2
|
B:EDO705
|
2.3
|
21.7
|
1.0
|
|
OD2
|
C:ASP659
|
2.4
|
20.9
|
1.0
|
|
O1
|
B:EDO705
|
2.4
|
16.8
|
1.0
|
|
OD1
|
C:ASP628
|
2.4
|
28.1
|
1.0
|
|
O
|
C:HOH884
|
2.6
|
18.5
|
1.0
|
|
C1
|
B:EDO705
|
3.1
|
27.8
|
1.0
|
|
C2
|
B:EDO705
|
3.2
|
29.8
|
1.0
|
|
H11
|
B:EDO705
|
3.3
|
33.4
|
1.0
|
|
C
|
C:GLY677
|
3.4
|
16.7
|
1.0
|
|
CG
|
C:ASP659
|
3.4
|
48.0
|
1.0
|
|
CG
|
C:ASP628
|
3.5
|
22.0
|
1.0
|
|
C
|
B:PRO656
|
3.5
|
18.5
|
1.0
|
|
HA2
|
B:GLY657
|
3.6
|
20.3
|
1.0
|
|
HB3
|
C:PHE679
|
3.6
|
37.1
|
1.0
|
|
H22
|
B:EDO705
|
3.7
|
35.8
|
1.0
|
|
HB2
|
B:PRO656
|
3.7
|
26.1
|
1.0
|
|
OD1
|
C:ASP659
|
3.8
|
27.5
|
1.0
|
|
OD2
|
C:ASP628
|
3.8
|
29.9
|
1.0
|
|
O
|
C:HOH850
|
4.0
|
28.2
|
1.0
|
|
HA
|
C:TYR678
|
4.0
|
27.5
|
1.0
|
|
HA2
|
C:GLY677
|
4.0
|
36.8
|
1.0
|
|
H21
|
B:EDO705
|
4.1
|
35.8
|
1.0
|
|
O
|
C:ASP659
|
4.1
|
16.4
|
1.0
|
|
H12
|
B:EDO705
|
4.2
|
33.4
|
1.0
|
|
N
|
C:PHE679
|
4.2
|
18.5
|
1.0
|
|
HG1
|
C:THR658
|
4.2
|
29.5
|
1.0
|
|
CA
|
C:GLY677
|
4.2
|
30.7
|
1.0
|
|
HA
|
C:PHE679
|
4.2
|
34.4
|
1.0
|
|
C
|
C:TYR678
|
4.2
|
15.4
|
1.0
|
|
H
|
C:PHE679
|
4.3
|
22.2
|
1.0
|
|
CA
|
B:GLY657
|
4.3
|
16.9
|
1.0
|
|
N
|
C:TYR678
|
4.3
|
16.6
|
1.0
|
|
N
|
B:GLY657
|
4.3
|
21.2
|
1.0
|
|
HA3
|
C:GLY677
|
4.3
|
36.8
|
1.0
|
|
CA
|
C:TYR678
|
4.4
|
22.9
|
1.0
|
|
CA
|
B:PRO656
|
4.4
|
13.6
|
1.0
|
|
CB
|
C:PHE679
|
4.5
|
30.9
|
1.0
|
|
CB
|
B:PRO656
|
4.5
|
21.8
|
1.0
|
|
CA
|
C:PHE679
|
4.5
|
28.7
|
1.0
|
|
HA
|
B:PRO656
|
4.5
|
16.3
|
1.0
|
|
H
|
C:ASP659
|
4.7
|
27.2
|
1.0
|
|
CB
|
C:ASP659
|
4.7
|
25.3
|
1.0
|
|
CB
|
C:ASP628
|
4.7
|
24.3
|
1.0
|
|
O
|
C:TYR678
|
4.7
|
18.6
|
1.0
|
|
C
|
B:GLY657
|
4.7
|
34.3
|
1.0
|
|
HB3
|
C:ASP628
|
4.8
|
29.2
|
1.0
|
|
HA
|
C:ASP628
|
4.8
|
24.9
|
1.0
|
|
HB2
|
C:ASP659
|
4.8
|
30.3
|
1.0
|
|
C
|
C:ASP659
|
4.8
|
18.6
|
1.0
|
|
H
|
B:THR658
|
4.9
|
20.5
|
1.0
|
|
OG1
|
C:THR658
|
4.9
|
24.6
|
1.0
|
|
N
|
B:THR658
|
5.0
|
17.1
|
1.0
|
|
HB3
|
B:PRO656
|
5.0
|
26.1
|
1.0
|
|
Calcium binding site 4 out
of 6 in 6cl6
Go back to
Calcium Binding Sites List in 6cl6
Calcium binding site 4 out
of 6 in the Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca702
b:21.6
occ:1.00
|
O
|
F:PRO656
|
2.3
|
26.9
|
1.0
|
|
O
|
D:GLY677
|
2.4
|
19.5
|
1.0
|
|
OD1
|
D:ASP628
|
2.4
|
27.5
|
1.0
|
|
O
|
F:HOH1112
|
2.4
|
19.3
|
1.0
|
|
O
|
D:HOH810
|
2.5
|
24.4
|
1.0
|
|
O
|
D:HOH999
|
2.6
|
24.4
|
1.0
|
|
O
|
D:HOH929
|
2.6
|
12.7
|
1.0
|
|
CG
|
D:ASP628
|
3.4
|
47.6
|
1.0
|
|
C
|
F:PRO656
|
3.5
|
24.6
|
1.0
|
|
HB3
|
D:PHE679
|
3.6
|
17.8
|
1.0
|
|
C
|
D:GLY677
|
3.6
|
18.0
|
1.0
|
|
HB3
|
D:ASP659
|
3.6
|
31.5
|
1.0
|
|
HB2
|
F:PRO656
|
3.7
|
26.6
|
1.0
|
|
OD2
|
D:ASP628
|
3.8
|
38.5
|
1.0
|
|
HA2
|
F:GLY657
|
3.9
|
31.4
|
1.0
|
|
HA
|
D:TYR678
|
4.1
|
24.1
|
1.0
|
|
HA2
|
D:GLY677
|
4.1
|
24.2
|
1.0
|
|
HA
|
F:PRO656
|
4.2
|
23.0
|
1.0
|
|
CA
|
F:PRO656
|
4.2
|
19.2
|
1.0
|
|
O
|
D:HOH1343
|
4.3
|
23.5
|
1.0
|
|
N
|
D:PHE679
|
4.3
|
15.0
|
1.0
|
|
O
|
D:ASP659
|
4.4
|
16.9
|
1.0
|
|
H
|
D:PHE679
|
4.4
|
18.0
|
1.0
|
|
CA
|
D:GLY677
|
4.4
|
20.2
|
1.0
|
|
OD2
|
D:ASP659
|
4.4
|
26.2
|
1.0
|
|
CB
|
F:PRO656
|
4.4
|
22.2
|
1.0
|
|
C
|
D:TYR678
|
4.4
|
21.3
|
1.0
|
|
N
|
F:GLY657
|
4.4
|
17.7
|
1.0
|
|
CB
|
D:PHE679
|
4.5
|
14.8
|
1.0
|
|
HA
|
D:PHE679
|
4.5
|
18.9
|
1.0
|
|
N
|
D:TYR678
|
4.5
|
21.1
|
1.0
|
|
HA3
|
D:GLY677
|
4.5
|
24.2
|
1.0
|
|
HA
|
D:ASP628
|
4.5
|
26.6
|
1.0
|
|
CA
|
F:GLY657
|
4.5
|
26.1
|
1.0
|
|
CA
|
D:TYR678
|
4.6
|
20.0
|
1.0
|
|
CB
|
D:ASP659
|
4.6
|
26.2
|
1.0
|
|
CB
|
D:ASP628
|
4.6
|
23.4
|
1.0
|
|
HB3
|
D:ASP628
|
4.7
|
28.0
|
1.0
|
|
CA
|
D:PHE679
|
4.7
|
15.8
|
1.0
|
|
H
|
D:ASP659
|
4.8
|
20.7
|
1.0
|
|
O
|
F:THR658
|
4.8
|
22.0
|
1.0
|
|
OG1
|
D:THR658
|
4.8
|
17.9
|
1.0
|
|
HB3
|
F:PRO656
|
4.8
|
26.6
|
1.0
|
|
H
|
F:THR658
|
4.9
|
32.1
|
1.0
|
|
C
|
F:GLY657
|
4.9
|
35.0
|
1.0
|
|
O
|
D:TYR678
|
4.9
|
21.4
|
1.0
|
|
HB2
|
D:PHE679
|
5.0
|
17.8
|
1.0
|
|
CG
|
D:ASP659
|
5.0
|
33.5
|
1.0
|
|
Calcium binding site 5 out
of 6 in 6cl6
Go back to
Calcium Binding Sites List in 6cl6
Calcium binding site 5 out
of 6 in the Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca705
b:18.6
occ:1.00
|
O
|
D:PRO656
|
2.3
|
20.7
|
1.0
|
|
O
|
E:GLY677
|
2.4
|
14.8
|
1.0
|
|
O2
|
D:EDO706
|
2.4
|
23.1
|
1.0
|
|
OD2
|
E:ASP659
|
2.5
|
25.0
|
1.0
|
|
OD1
|
E:ASP628
|
2.5
|
14.9
|
1.0
|
|
O1
|
D:EDO706
|
2.5
|
18.3
|
1.0
|
|
O
|
E:HOH856
|
2.5
|
14.5
|
1.0
|
|
C2
|
D:EDO706
|
3.0
|
33.7
|
1.0
|
|
H22
|
D:EDO706
|
3.1
|
40.5
|
1.0
|
|
C1
|
D:EDO706
|
3.2
|
38.5
|
1.0
|
|
CG
|
E:ASP659
|
3.4
|
74.8
|
1.0
|
|
CG
|
E:ASP628
|
3.5
|
26.3
|
1.0
|
|
C
|
E:GLY677
|
3.5
|
17.2
|
1.0
|
|
C
|
D:PRO656
|
3.6
|
19.8
|
1.0
|
|
H11
|
D:EDO706
|
3.6
|
46.2
|
1.0
|
|
OD1
|
E:ASP659
|
3.7
|
31.0
|
1.0
|
|
OD2
|
E:ASP628
|
3.8
|
26.4
|
1.0
|
|
HB2
|
D:PRO656
|
3.8
|
28.6
|
1.0
|
|
HA2
|
D:GLY657
|
3.8
|
29.1
|
1.0
|
|
HA
|
E:PHE679
|
3.9
|
21.3
|
1.0
|
|
HB3
|
E:PHE679
|
4.0
|
15.6
|
1.0
|
|
HA
|
E:TYR678
|
4.0
|
14.9
|
1.0
|
|
N
|
E:PHE679
|
4.0
|
14.8
|
1.0
|
|
O
|
E:HOH805
|
4.1
|
24.3
|
1.0
|
|
H21
|
D:EDO706
|
4.1
|
40.5
|
1.0
|
|
C
|
E:TYR678
|
4.1
|
16.7
|
1.0
|
|
H
|
E:PHE679
|
4.1
|
17.7
|
1.0
|
|
O
|
E:ASP659
|
4.2
|
14.8
|
1.0
|
|
H12
|
D:EDO706
|
4.2
|
46.2
|
1.0
|
|
HA2
|
E:GLY677
|
4.2
|
31.2
|
1.0
|
|
HG1
|
E:THR658
|
4.3
|
26.6
|
1.0
|
|
CA
|
E:PHE679
|
4.4
|
17.8
|
1.0
|
|
CA
|
E:TYR678
|
4.4
|
12.4
|
1.0
|
|
CA
|
E:GLY677
|
4.4
|
26.0
|
1.0
|
|
N
|
E:TYR678
|
4.4
|
13.1
|
1.0
|
|
CA
|
D:PRO656
|
4.5
|
21.7
|
1.0
|
|
N
|
D:GLY657
|
4.5
|
22.9
|
1.0
|
|
HA
|
D:PRO656
|
4.5
|
26.1
|
1.0
|
|
CA
|
D:GLY657
|
4.5
|
24.3
|
1.0
|
|
HA3
|
E:GLY677
|
4.6
|
31.2
|
1.0
|
|
CB
|
D:PRO656
|
4.6
|
23.8
|
1.0
|
|
CB
|
E:PHE679
|
4.6
|
13.0
|
1.0
|
|
O
|
E:TYR678
|
4.6
|
16.2
|
1.0
|
|
CB
|
E:ASP659
|
4.7
|
23.8
|
1.0
|
|
HA
|
E:ASP628
|
4.7
|
15.1
|
1.0
|
|
HB2
|
E:ASP659
|
4.8
|
28.6
|
1.0
|
|
CB
|
E:ASP628
|
4.8
|
14.4
|
1.0
|
|
C
|
D:GLY657
|
4.8
|
19.2
|
1.0
|
|
HB2
|
E:PHE679
|
4.9
|
15.6
|
1.0
|
|
H
|
E:ASP659
|
4.9
|
20.4
|
1.0
|
|
OG1
|
E:THR658
|
4.9
|
22.1
|
1.0
|
|
C
|
E:ASP659
|
4.9
|
16.7
|
1.0
|
|
HB3
|
E:ASP628
|
5.0
|
17.3
|
1.0
|
|
H
|
D:THR658
|
5.0
|
21.5
|
1.0
|
|
Calcium binding site 6 out
of 6 in 6cl6
Go back to
Calcium Binding Sites List in 6cl6
Calcium binding site 6 out
of 6 in the Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of P. Aeruginosa R2 Pyocin Fiber PA0620 Comprising C- Terminal Residues 323-691 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca706
b:21.2
occ:1.00
|
O
|
F:GLY677
|
2.3
|
20.9
|
1.0
|
|
O
|
E:PRO656
|
2.3
|
20.0
|
1.0
|
|
O1
|
E:EDO707
|
2.4
|
17.0
|
1.0
|
|
OD1
|
F:ASP628
|
2.4
|
21.9
|
1.0
|
|
OD1
|
F:ASP659
|
2.4
|
27.6
|
1.0
|
|
O2
|
E:EDO707
|
2.4
|
27.4
|
1.0
|
|
O
|
F:HOH810
|
2.6
|
15.3
|
1.0
|
|
C2
|
E:EDO707
|
3.2
|
28.9
|
1.0
|
|
H22
|
E:EDO707
|
3.2
|
34.7
|
1.0
|
|
C1
|
E:EDO707
|
3.3
|
23.8
|
1.0
|
|
C
|
F:GLY677
|
3.4
|
24.1
|
1.0
|
|
CG
|
F:ASP628
|
3.5
|
32.4
|
1.0
|
|
CG
|
F:ASP659
|
3.5
|
30.0
|
1.0
|
|
HB3
|
F:PHE679
|
3.5
|
33.4
|
1.0
|
|
C
|
E:PRO656
|
3.5
|
15.4
|
1.0
|
|
HA2
|
E:GLY657
|
3.6
|
20.2
|
1.0
|
|
OD2
|
F:ASP628
|
3.9
|
30.7
|
1.0
|
|
HB2
|
E:PRO656
|
3.9
|
19.9
|
1.0
|
|
H11
|
E:EDO707
|
3.9
|
28.5
|
1.0
|
|
OD2
|
F:ASP659
|
3.9
|
20.6
|
1.0
|
|
HA
|
F:TYR678
|
4.0
|
19.0
|
1.0
|
|
N
|
F:PHE679
|
4.0
|
16.2
|
1.0
|
|
O
|
F:ASP659
|
4.0
|
19.8
|
1.0
|
|
H
|
F:PHE679
|
4.1
|
19.5
|
1.0
|
|
HA2
|
F:GLY677
|
4.1
|
30.8
|
1.0
|
|
HG1
|
F:THR658
|
4.1
|
26.6
|
1.0
|
|
HA
|
F:PHE679
|
4.1
|
28.6
|
1.0
|
|
C
|
F:TYR678
|
4.1
|
18.2
|
1.0
|
|
H21
|
E:EDO707
|
4.2
|
34.7
|
1.0
|
|
H12
|
E:EDO707
|
4.2
|
28.5
|
1.0
|
|
O
|
F:HOH917
|
4.2
|
14.8
|
1.0
|
|
CA
|
E:GLY657
|
4.3
|
16.8
|
1.0
|
|
CA
|
F:GLY677
|
4.3
|
25.6
|
1.0
|
|
N
|
F:TYR678
|
4.3
|
21.6
|
1.0
|
|
CB
|
F:PHE679
|
4.3
|
27.8
|
1.0
|
|
N
|
E:GLY657
|
4.3
|
18.0
|
1.0
|
|
CA
|
F:TYR678
|
4.4
|
15.9
|
1.0
|
|
CA
|
F:PHE679
|
4.4
|
23.8
|
1.0
|
|
HA3
|
F:GLY677
|
4.5
|
30.8
|
1.0
|
|
CA
|
E:PRO656
|
4.5
|
17.9
|
1.0
|
|
HA
|
E:PRO656
|
4.6
|
21.5
|
1.0
|
|
CB
|
E:PRO656
|
4.6
|
16.6
|
1.0
|
|
HA
|
F:ASP628
|
4.7
|
34.4
|
1.0
|
|
CB
|
F:ASP628
|
4.7
|
25.9
|
1.0
|
|
O
|
F:TYR678
|
4.7
|
21.6
|
1.0
|
|
H
|
F:ASP659
|
4.7
|
21.8
|
1.0
|
|
CB
|
F:ASP659
|
4.7
|
20.3
|
1.0
|
|
HB3
|
F:ASP628
|
4.7
|
31.1
|
1.0
|
|
C
|
E:GLY657
|
4.8
|
26.0
|
1.0
|
|
C
|
F:ASP659
|
4.8
|
16.1
|
1.0
|
|
OG1
|
F:THR658
|
4.8
|
22.2
|
1.0
|
|
HB2
|
F:ASP659
|
4.8
|
24.4
|
1.0
|
|
HB2
|
F:PHE679
|
4.9
|
33.4
|
1.0
|
|
H
|
E:THR658
|
4.9
|
24.0
|
1.0
|
|
N
|
E:THR658
|
5.0
|
20.0
|
1.0
|
|
Reference:
S.A.Buth,
M.M.Shneider,
D.Scholl,
P.G.Leiman.
Structure and Analysis of R1 and R2 Pyocin Receptor-Binding Fibers. Viruses V. 10 2018.
ISSN: ISSN 1999-4915
PubMed: 30110933
DOI: 10.3390/V10080427
Page generated: Wed Jul 9 13:06:01 2025
|
