Calcium in PDB 6d03: Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; One Molecule of Parasite Ligand.

The structure of Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; One Molecule of Parasite Ligand. also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Calcium atom in the Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; One Molecule of Parasite Ligand. (pdb code 6d03). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; One Molecule of Parasite Ligand., PDB code: 6d03:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; One Molecule of Parasite Ligand.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; One Molecule of Parasite Ligand. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:16.9 occ:1.00 OE2 A:GLU465 2.4 16.4 1.0 O A:THR310 2.4 20.9 1.0 OE1 A:GLU468 2.5 14.6 1.0 O A:PHE313 2.6 17.8 1.0 OE1 A:GLU465 2.9 16.4 1.0 CD A:GLU465 3.0 16.4 1.0 OG1 A:THR310 3.1 20.9 1.0 C A:PHE313 3.6 17.8 1.0 N A:GLY312 3.6 19.9 1.0 C A:THR310 3.6 20.9 1.0 N A:PHE313 3.6 17.8 1.0 CD A:GLU468 3.6 14.6 1.0 CB A:THR310 4.1 20.9 1.0 C A:GLY312 4.2 19.9 1.0 O A:ASP307 4.2 22.8 1.0 CA A:PHE313 4.3 17.8 1.0 CA A:GLY312 4.3 19.9 1.0 OE2 A:GLU468 4.3 14.6 1.0 C A:PRO311 4.3 22.1 1.0 N A:PRO314 4.4 16.6 1.0 CA A:PRO311 4.4 22.1 1.0 CG A:GLU465 4.5 16.4 1.0 CA A:PRO314 4.5 16.6 1.0 CA A:THR310 4.5 20.9 1.0 N A:PRO311 4.5 22.1 1.0 CB A:GLU468 4.6 14.6 1.0 CG A:GLU468 4.7 14.6 1.0 OG A:SER315 4.9 18.4 1.0 C A:PRO314 4.9 16.6 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; One Molecule of Parasite Ligand.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; One Molecule of Parasite Ligand. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:20.1 occ:1.00 OE2 B:GLU465 2.4 21.3 1.0 O B:PHE313 2.5 22.8 1.0 OE1 B:GLU468 2.5 20.5 1.0 O B:THR310 2.5 24.8 1.0 OE1 B:GLU465 2.5 21.3 1.0 CD B:GLU465 2.8 21.3 1.0 OG1 B:THR310 3.1 24.8 1.0 C B:PHE313 3.5 22.8 1.0 C B:THR310 3.7 24.8 1.0 CD B:GLU468 3.7 20.5 1.0 CA B:PRO314 3.7 20.3 1.0 CB B:THR310 3.9 24.8 1.0 N B:PRO314 4.0 20.3 1.0 C B:PRO314 4.0 20.3 1.0 N B:SER315 4.1 20.7 1.0 OE2 B:GLU468 4.3 20.5 1.0 CG B:GLU465 4.3 21.3 1.0 N B:PHE313 4.4 22.8 1.0 O B:ASP307 4.4 25.8 1.0 CA B:THR310 4.4 24.8 1.0 CA B:PHE313 4.6 22.8 1.0 N B:GLY312 4.6 24.2 1.0 N B:PRO311 4.6 25.1 1.0 CA B:PRO311 4.7 25.1 1.0 CB B:GLU468 4.7 20.5 1.0 C B:PRO311 4.7 25.1 1.0 CB B:SER315 4.8 20.7 1.0 CG B:GLU468 4.8 20.5 1.0 O B:PRO314 4.8 20.3 1.0 C B:GLY312 4.9 24.2 1.0 CA B:SER315 4.9 20.7 1.0 CB B:ASP307 4.9 25.8 1.0 CB B:PRO314 5.0 20.3 1.0

J.Gruszczyk, R.K.Huang, L.J.Chan, S.Menant, C.Hong, J.M.Murphy, Y.F.Mok, M.D.W.Griffin, R.D.Pearson, W.Wong, A.F.Cowman, Z.Yu, W.H.Tham. Cryo-Em Structure of An Essential Plasmodium Vivax Invasion Complex. Nature V. 559 135 2018.
ISSN: ISSN 0028-0836
PubMed: 29950717
DOI: 10.1038/S41586-018-0249-1