Atomistry » Calcium » PDB 6cmw-6d7o » 6d72
Atomistry »
  Calcium »
    PDB 6cmw-6d7o »
      6d72 »

Calcium in PDB 6d72: Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions.

Protein crystallography data

The structure of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions., PDB code: 6d72 was solved by E.V.Filippova, G.Minasov, O.Kiryukhina, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.17
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.761, 120.804, 123.330, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions. (pdb code 6d72). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions., PDB code: 6d72:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 6d72

Go back to Calcium Binding Sites List in 6d72
Calcium binding site 1 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:71.3
occ:1.00
OE2 B:GLU35 2.2 49.6 1.0
OE1 A:GLU76 2.2 56.5 1.0
OE1 A:GLU35 2.2 43.6 1.0
O B:HOH343 2.4 59.8 1.0
O A:HOH321 2.4 63.9 1.0
CA A:CA202 2.8 69.6 1.0
CD A:GLU76 3.0 53.9 1.0
CD A:GLU35 3.0 45.9 1.0
CD B:GLU35 3.1 47.3 1.0
OE2 A:GLU76 3.1 54.6 1.0
OE2 A:GLU35 3.2 50.3 1.0
OE1 B:GLU35 3.3 48.8 1.0
OE2 B:GLU76 4.0 57.5 1.0
O A:HOH307 4.2 40.0 1.0
CG B:GLU35 4.4 47.6 1.0
CG A:GLU76 4.4 52.6 1.0
OE1 B:GLU76 4.4 57.3 1.0
CG A:GLU35 4.5 45.4 1.0
O B:HOH351 4.5 53.5 1.0
CD B:GLU76 4.6 52.0 1.0
CB B:GLU35 4.8 46.7 1.0
CA A:GLU76 4.9 42.1 1.0
CB A:GLU76 4.9 46.1 1.0
O B:HOH314 5.0 63.2 1.0

Calcium binding site 2 out of 3 in 6d72

Go back to Calcium Binding Sites List in 6d72
Calcium binding site 2 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:69.6
occ:1.00
OE2 A:GLU35 2.2 50.3 1.0
OE1 B:GLU35 2.2 48.8 1.0
OE1 B:GLU76 2.2 57.3 1.0
O B:HOH351 2.4 53.5 1.0
O B:HOH314 2.4 63.2 1.0
CA A:CA201 2.8 71.3 1.0
CD B:GLU35 3.0 47.3 1.0
CD A:GLU35 3.0 45.9 1.0
CD B:GLU76 3.1 52.0 1.0
OE2 B:GLU35 3.2 49.6 1.0
OE2 B:GLU76 3.3 57.5 1.0
OE1 A:GLU35 3.4 43.6 1.0
O A:HOH320 3.9 67.3 1.0
OE2 A:GLU76 4.0 54.6 1.0
O B:HOH307 4.2 37.7 1.0
CG A:GLU35 4.3 45.4 1.0
CG B:GLU76 4.5 47.5 1.0
CG B:GLU35 4.5 47.6 1.0
O B:HOH343 4.5 59.8 1.0
OE1 A:GLU76 4.6 56.5 1.0
O B:HOH318 4.7 49.5 1.0
CB A:GLU35 4.7 46.7 1.0
CD A:GLU76 4.7 53.9 1.0
CA B:GLU76 4.8 39.8 1.0
CB B:GLU76 4.8 42.0 1.0
O A:HOH321 5.0 63.9 1.0

Calcium binding site 3 out of 3 in 6d72

Go back to Calcium Binding Sites List in 6d72
Calcium binding site 3 out of 3 in the Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca201

b:67.6
occ:1.00
OE2 C:GLU35 2.2 46.1 1.0
O C:HOH346 2.4 54.5 1.0
CD C:GLU35 3.1 43.9 1.0
OE1 C:GLU35 3.4 45.2 1.0
O C:HOH341 4.0 58.4 1.0
OE2 C:GLU76 4.2 46.4 1.0
CG C:GLU35 4.3 43.5 1.0
O C:HOH357 4.6 52.7 1.0
CB C:GLU35 4.7 41.4 1.0
OE1 C:GLU76 4.8 48.0 1.0
O9 C:MLI202 4.9 69.4 0.5
CD C:GLU76 5.0 48.6 1.0

Reference:

E.V.Filippova, G.Minasov, O.Kiryukhina, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Spermidine/Spermine N-Acetyltransferase Speg From Yersinia Pestis in Complex with Calcium Ions. To Be Published.
Page generated: Mon Jul 15 17:39:38 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy