Atomistry » Calcium » PDB 6hi0-6i1q » 6hu9
Atomistry »
  Calcium »
    PDB 6hi0-6i1q »
      6hu9 »

Calcium in PDB 6hu9: III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae

Enzymatic activity of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae

All present enzymatic activity of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae:
1.10.2.2; 1.9.3.1;

Other elements in 6hu9:

The structure of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 2 atoms
Iron (Fe) 14 atoms
Copper (Cu) 6 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae (pdb code 6hu9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae, PDB code: 6hu9:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6hu9

Go back to Calcium Binding Sites List in 6hu9
Calcium binding site 1 out of 2 in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca604

b:48.0
occ:1.00
O a:GLU39 2.5 39.2 1.0
O a:ALA42 2.6 38.5 1.0
O a:GLY44 2.8 42.3 1.0
OE1 a:GLU39 3.1 39.2 1.0
O a:PRO441 3.2 35.7 1.0
C a:GLU39 3.7 39.2 1.0
C a:ALA42 3.8 38.5 1.0
C a:GLY44 3.9 42.3 1.0
CD a:GLU39 3.9 39.2 1.0
N a:GLY44 4.1 42.3 1.0
OD1 a:ASP442 4.1 38.5 1.0
CA a:LEU40 4.3 34.0 1.0
OE2 a:GLU39 4.3 39.2 1.0
C a:PRO441 4.3 35.7 1.0
CE2 a:TYR443 4.4 35.8 1.0
C a:PRO43 4.4 39.3 1.0
CA a:PRO43 4.4 39.3 1.0
N a:LEU40 4.4 34.0 1.0
CA a:ASP442 4.5 38.5 1.0
N a:ALA42 4.5 38.5 1.0
N a:PRO43 4.6 39.3 1.0
CA a:GLY44 4.6 42.3 1.0
CG a:GLN46 4.6 45.2 1.0
CG a:ASP442 4.7 38.5 1.0
OH a:TYR443 4.7 35.8 1.0
CA a:GLU39 4.7 39.2 1.0
CD1 a:LEU40 4.7 34.0 1.0
N a:ALA41 4.8 36.6 1.0
CZ a:TYR443 4.8 35.8 1.0
C a:LEU40 4.8 34.0 1.0
N a:SER45 4.8 46.6 1.0
N a:GLN46 4.8 45.2 1.0
CA a:ALA42 4.8 38.5 1.0
N a:ASP442 4.9 38.5 1.0
CB a:ASP442 4.9 38.5 1.0
CA a:SER45 5.0 46.6 1.0
CB a:GLU39 5.0 39.2 1.0

Calcium binding site 2 out of 2 in 6hu9

Go back to Calcium Binding Sites List in 6hu9
Calcium binding site 2 out of 2 in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
m:Ca604

b:56.4
occ:1.00
O m:ALA42 2.6 39.5 1.0
O m:GLU39 2.6 43.0 1.0
O m:GLY44 3.2 47.4 1.0
O m:PRO441 3.4 45.9 1.0
OE1 m:GLU39 3.6 43.0 1.0
C m:ALA42 3.6 39.5 1.0
C m:GLU39 3.8 43.0 1.0
CA m:PRO43 3.9 42.3 1.0
N m:GLY44 4.1 47.4 1.0
CE2 m:TYR443 4.1 41.9 1.0
C m:GLY44 4.1 47.4 1.0
CA m:LEU40 4.1 39.2 1.0
C m:PRO43 4.1 42.3 1.0
OH m:TYR443 4.2 41.9 1.0
N m:PRO43 4.2 42.3 1.0
OD1 m:ASP442 4.3 45.9 1.0
CD1 m:LEU40 4.3 39.2 1.0
CZ m:TYR443 4.3 41.9 1.0
N m:LEU40 4.4 39.2 1.0
CD m:GLU39 4.5 43.0 1.0
N m:ALA42 4.5 39.5 1.0
CA m:ASP442 4.5 45.9 1.0
C m:PRO441 4.5 45.9 1.0
CG m:ASP442 4.6 45.9 1.0
C m:LEU40 4.6 39.2 1.0
CG m:GLN46 4.7 50.2 1.0
N m:ALA41 4.7 36.4 1.0
CA m:GLY44 4.7 47.4 1.0
CA m:ALA42 4.7 39.5 1.0
CD2 m:TYR443 4.8 41.9 1.0
OE2 m:GLU39 4.8 43.0 1.0
CB m:ASP442 4.9 45.9 1.0
O m:PRO43 4.9 42.3 1.0
CA m:GLU39 4.9 43.0 1.0
N m:ASP442 5.0 45.9 1.0

Reference:

A.M.Hartley, N.Lukoyanova, Y.Zhang, A.Cabrera-Orefice, S.Arnold, B.Meunier, N.Pinotsis, A.Marechal. Structure of Yeast Cytochrome C Oxidase in A Supercomplex with Cytochrome BC1. Nat. Struct. Mol. Biol. V. 26 78 2019.
ISSN: ESSN 1545-9985
PubMed: 30598554
DOI: 10.1038/S41594-018-0172-Z
Page generated: Tue Jul 16 08:32:31 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy