Calcium in PDB 6ixx: Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
Protein crystallography data
The structure of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi, PDB code: 6ixx
was solved by
J.H.Hao,
L.H.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
38.67 /
2.00
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.664,
51.852,
102.142,
90.00,
97.68,
90.00
|
|
R / Rfree (%)
|
18.4 /
23
|
Other elements in 6ixx:
The structure of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
(pdb code 6ixx). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi, PDB code: 6ixx:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 6ixx
Go back to
Calcium Binding Sites List in 6ixx
Calcium binding site 1 out
of 8 in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:19.4
occ:1.00
|
O
|
A:GLY366
|
2.3
|
16.4
|
1.0
|
|
O
|
A:GLY368
|
2.3
|
15.9
|
1.0
|
|
OD2
|
A:ASP370
|
2.3
|
15.6
|
1.0
|
|
OD1
|
A:ASP388
|
2.4
|
21.0
|
1.0
|
|
O
|
A:SER385
|
2.4
|
16.3
|
1.0
|
|
O
|
A:GLY383
|
2.4
|
15.7
|
1.0
|
|
OD2
|
A:ASP388
|
3.0
|
16.7
|
1.0
|
|
CG
|
A:ASP388
|
3.0
|
18.0
|
1.0
|
|
C
|
A:GLY368
|
3.5
|
16.0
|
1.0
|
|
C
|
A:GLY366
|
3.5
|
21.3
|
1.0
|
|
C
|
A:GLY383
|
3.5
|
17.2
|
1.0
|
|
CG
|
A:ASP370
|
3.5
|
23.0
|
1.0
|
|
C
|
A:SER385
|
3.6
|
20.8
|
1.0
|
|
C
|
A:GLY384
|
3.8
|
16.3
|
1.0
|
|
C
|
A:ALA367
|
3.8
|
16.6
|
1.0
|
|
O
|
A:ALA367
|
3.9
|
16.4
|
1.0
|
|
CA
|
A:GLY384
|
3.9
|
16.2
|
1.0
|
|
N
|
A:SER385
|
4.0
|
16.6
|
1.0
|
|
N
|
A:GLY368
|
4.1
|
20.8
|
1.0
|
|
O
|
A:GLY384
|
4.1
|
16.2
|
1.0
|
|
N
|
A:GLY384
|
4.2
|
16.0
|
1.0
|
|
CA
|
A:ALA367
|
4.2
|
16.9
|
1.0
|
|
CB
|
A:ASP370
|
4.2
|
16.0
|
1.0
|
|
N
|
A:ASP370
|
4.2
|
15.2
|
1.0
|
|
C
|
A:GLY365
|
4.3
|
19.3
|
1.0
|
|
N
|
A:ALA367
|
4.3
|
16.9
|
1.0
|
|
N
|
A:GLY366
|
4.3
|
16.2
|
1.0
|
|
CA
|
A:GLY368
|
4.4
|
16.4
|
1.0
|
|
N
|
A:ASN369
|
4.5
|
19.8
|
1.0
|
|
OD1
|
A:ASP370
|
4.5
|
24.2
|
1.0
|
|
CA
|
A:SER385
|
4.5
|
16.8
|
1.0
|
|
CB
|
A:ASP388
|
4.5
|
17.7
|
1.0
|
|
O
|
A:GLY365
|
4.5
|
19.3
|
1.0
|
|
CA
|
A:GLY366
|
4.6
|
16.5
|
1.0
|
|
N
|
A:GLY386
|
4.6
|
22.7
|
1.0
|
|
CA
|
A:ASN369
|
4.6
|
18.8
|
1.0
|
|
CA
|
A:GLY383
|
4.6
|
15.5
|
1.0
|
|
CA
|
A:GLY386
|
4.6
|
18.4
|
1.0
|
|
CA
|
A:GLY365
|
4.7
|
21.0
|
1.0
|
|
C
|
A:GLY386
|
4.7
|
21.9
|
1.0
|
|
CA
|
A:CA505
|
4.8
|
18.0
|
1.0
|
|
CA
|
A:CA503
|
4.8
|
19.1
|
1.0
|
|
O
|
A:GLY386
|
4.8
|
16.1
|
1.0
|
|
C
|
A:ASN369
|
4.8
|
20.4
|
1.0
|
|
CA
|
A:ASP370
|
4.9
|
15.8
|
1.0
|
|
Calcium binding site 2 out
of 8 in 6ixx
Go back to
Calcium Binding Sites List in 6ixx
Calcium binding site 2 out
of 8 in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:20.0
occ:1.00
|
O
|
A:GLY376
|
2.4
|
18.1
|
1.0
|
|
OD1
|
A:ASP379
|
2.4
|
20.9
|
1.0
|
|
OD1
|
A:ASN361
|
2.4
|
19.2
|
1.0
|
|
O
|
A:GLY374
|
2.4
|
20.6
|
1.0
|
|
O
|
A:ALA359
|
2.4
|
18.4
|
1.0
|
|
O
|
A:ASN357
|
2.5
|
17.8
|
1.0
|
|
OD2
|
A:ASP379
|
2.9
|
18.4
|
1.0
|
|
CG
|
A:ASP379
|
3.0
|
22.2
|
1.0
|
|
CG
|
A:ASN361
|
3.4
|
18.1
|
1.0
|
|
C
|
A:GLY374
|
3.5
|
20.8
|
1.0
|
|
C
|
A:GLY376
|
3.5
|
18.4
|
1.0
|
|
C
|
A:ALA359
|
3.6
|
19.1
|
1.0
|
|
C
|
A:ASN357
|
3.6
|
18.0
|
1.0
|
|
N
|
A:GLY376
|
3.8
|
24.5
|
1.0
|
|
C
|
A:GLY375
|
3.9
|
17.3
|
1.0
|
|
N
|
A:ASN357
|
3.9
|
23.1
|
1.0
|
|
O
|
A:GLY375
|
4.1
|
17.6
|
1.0
|
|
N
|
A:ASN361
|
4.1
|
27.0
|
1.0
|
|
C
|
A:ALA358
|
4.2
|
23.0
|
1.0
|
|
CB
|
A:ASN361
|
4.2
|
17.6
|
1.0
|
|
N
|
A:ALA359
|
4.2
|
20.3
|
1.0
|
|
ND2
|
A:ASN361
|
4.2
|
17.9
|
1.0
|
|
CA
|
A:GLY376
|
4.3
|
18.3
|
1.0
|
|
CA
|
A:GLY375
|
4.4
|
23.0
|
1.0
|
|
N
|
A:GLY375
|
4.4
|
16.4
|
1.0
|
|
CA
|
A:GLY374
|
4.4
|
16.4
|
1.0
|
|
O
|
A:ALA358
|
4.4
|
19.9
|
1.0
|
|
CB
|
A:ASP379
|
4.4
|
23.2
|
1.0
|
|
CA
|
A:ASN357
|
4.5
|
22.9
|
1.0
|
|
N
|
A:SER360
|
4.5
|
19.2
|
1.0
|
|
CA
|
A:SER360
|
4.5
|
20.9
|
1.0
|
|
N
|
A:ALA358
|
4.5
|
18.6
|
1.0
|
|
CA
|
A:ALA359
|
4.6
|
19.5
|
1.0
|
|
CA
|
A:CA504
|
4.6
|
20.2
|
1.0
|
|
N
|
A:GLY377
|
4.6
|
23.6
|
1.0
|
|
OD1
|
A:ASN357
|
4.6
|
18.4
|
1.0
|
|
CA
|
A:ALA358
|
4.6
|
19.0
|
1.0
|
|
O
|
A:GLY377
|
4.6
|
18.5
|
1.0
|
|
C
|
A:SER360
|
4.7
|
22.5
|
1.0
|
|
C
|
A:GLY356
|
4.8
|
19.8
|
1.0
|
|
CA
|
A:ASN361
|
4.8
|
17.6
|
1.0
|
|
CA
|
A:GLY377
|
4.8
|
21.3
|
1.0
|
|
C
|
A:GLY377
|
4.8
|
26.4
|
1.0
|
|
CA
|
A:GLY356
|
4.9
|
16.4
|
1.0
|
|
Calcium binding site 3 out
of 8 in 6ixx
Go back to
Calcium Binding Sites List in 6ixx
Calcium binding site 3 out
of 8 in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:19.1
occ:1.00
|
O
|
A:GLY348
|
2.3
|
22.7
|
1.0
|
|
OD1
|
A:ASP370
|
2.3
|
24.2
|
1.0
|
|
O
|
A:ALA367
|
2.4
|
16.4
|
1.0
|
|
O
|
A:GLY350
|
2.4
|
16.1
|
1.0
|
|
OD2
|
A:ASP352
|
2.4
|
18.8
|
1.0
|
|
O
|
A:GLY365
|
2.4
|
19.3
|
1.0
|
|
CG
|
A:ASP370
|
3.0
|
23.0
|
1.0
|
|
OD2
|
A:ASP370
|
3.0
|
15.6
|
1.0
|
|
CG
|
A:ASP352
|
3.3
|
18.1
|
1.0
|
|
C
|
A:GLY348
|
3.5
|
22.6
|
1.0
|
|
C
|
A:GLY350
|
3.6
|
19.7
|
1.0
|
|
C
|
A:GLY365
|
3.6
|
19.3
|
1.0
|
|
C
|
A:ALA367
|
3.6
|
16.6
|
1.0
|
|
C
|
A:GLY366
|
4.0
|
21.3
|
1.0
|
|
N
|
A:GLY350
|
4.0
|
22.7
|
1.0
|
|
C
|
A:SER349
|
4.1
|
28.2
|
1.0
|
|
CB
|
A:ASP352
|
4.1
|
18.7
|
1.0
|
|
N
|
A:GLY348
|
4.1
|
22.3
|
1.0
|
|
OD1
|
A:ASP352
|
4.1
|
19.4
|
1.0
|
|
O
|
A:GLY366
|
4.1
|
16.4
|
1.0
|
|
N
|
A:ALA367
|
4.2
|
16.9
|
1.0
|
|
N
|
A:ASP352
|
4.2
|
18.1
|
1.0
|
|
CA
|
A:SER349
|
4.3
|
17.3
|
1.0
|
|
N
|
A:SER349
|
4.3
|
23.4
|
1.0
|
|
CA
|
A:GLY366
|
4.3
|
16.5
|
1.0
|
|
O
|
A:HOH647
|
4.4
|
17.4
|
1.0
|
|
CA
|
A:GLY350
|
4.4
|
22.8
|
1.0
|
|
CA
|
A:GLY348
|
4.4
|
18.1
|
1.0
|
|
CB
|
A:ASP370
|
4.4
|
16.0
|
1.0
|
|
N
|
A:GLY366
|
4.4
|
16.2
|
1.0
|
|
CA
|
A:GLY365
|
4.4
|
21.0
|
1.0
|
|
CA
|
A:GLY368
|
4.5
|
16.4
|
1.0
|
|
N
|
A:GLY368
|
4.5
|
20.8
|
1.0
|
|
N
|
A:ASN351
|
4.5
|
17.7
|
1.0
|
|
CA
|
A:ALA367
|
4.5
|
16.9
|
1.0
|
|
O
|
A:SER349
|
4.6
|
17.1
|
1.0
|
|
C
|
A:GLY368
|
4.6
|
16.0
|
1.0
|
|
O
|
A:GLY368
|
4.6
|
15.9
|
1.0
|
|
C
|
A:GLY347
|
4.7
|
21.4
|
1.0
|
|
CA
|
A:ASN351
|
4.7
|
19.3
|
1.0
|
|
CA
|
A:CA501
|
4.8
|
19.4
|
1.0
|
|
CA
|
A:ASP352
|
4.8
|
21.9
|
1.0
|
|
C
|
A:ASN351
|
4.9
|
19.5
|
1.0
|
|
CA
|
A:GLY347
|
4.9
|
23.2
|
1.0
|
|
Calcium binding site 4 out
of 8 in 6ixx
Go back to
Calcium Binding Sites List in 6ixx
Calcium binding site 4 out
of 8 in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:20.2
occ:1.00
|
O
|
A:ASP397
|
2.3
|
28.2
|
1.0
|
|
O
|
A:GLY375
|
2.4
|
17.6
|
1.0
|
|
O
|
A:GLY377
|
2.4
|
18.5
|
1.0
|
|
O
|
A:HOH605
|
2.4
|
18.4
|
1.0
|
|
OD2
|
A:ASP379
|
2.4
|
18.4
|
1.0
|
|
OD1
|
A:ASP404
|
2.5
|
17.0
|
1.0
|
|
CG
|
A:ASP404
|
3.3
|
25.4
|
1.0
|
|
OD2
|
A:ASP404
|
3.4
|
24.1
|
1.0
|
|
C
|
A:ASP397
|
3.4
|
25.6
|
1.0
|
|
CG
|
A:ASP379
|
3.5
|
22.2
|
1.0
|
|
C
|
A:GLY375
|
3.5
|
17.3
|
1.0
|
|
C
|
A:GLY377
|
3.6
|
26.4
|
1.0
|
|
O
|
A:GLY376
|
3.9
|
18.1
|
1.0
|
|
C
|
A:GLY376
|
3.9
|
18.4
|
1.0
|
|
CA
|
A:ASP397
|
4.0
|
18.7
|
1.0
|
|
C
|
A:GLY374
|
4.1
|
20.8
|
1.0
|
|
N
|
A:ASP379
|
4.1
|
17.4
|
1.0
|
|
N
|
A:GLY375
|
4.1
|
16.4
|
1.0
|
|
CB
|
A:ASP379
|
4.2
|
23.2
|
1.0
|
|
N
|
A:GLY377
|
4.2
|
23.6
|
1.0
|
|
O
|
A:GLY374
|
4.3
|
20.6
|
1.0
|
|
CB
|
A:ASP397
|
4.3
|
22.4
|
1.0
|
|
OD1
|
A:ASP379
|
4.4
|
20.9
|
1.0
|
|
N
|
A:GLY376
|
4.4
|
24.5
|
1.0
|
|
CA
|
A:GLY374
|
4.4
|
16.4
|
1.0
|
|
CA
|
A:GLY375
|
4.4
|
23.0
|
1.0
|
|
CA
|
A:GLY376
|
4.5
|
18.3
|
1.0
|
|
N
|
A:SER398
|
4.5
|
22.8
|
1.0
|
|
CA
|
A:GLY377
|
4.5
|
21.3
|
1.0
|
|
N
|
A:ALA378
|
4.5
|
24.2
|
1.0
|
|
O
|
A:HOH693
|
4.6
|
16.1
|
1.0
|
|
CA
|
A:CA502
|
4.6
|
20.0
|
1.0
|
|
CA
|
A:ALA378
|
4.6
|
24.7
|
1.0
|
|
C
|
A:ALA378
|
4.7
|
23.6
|
1.0
|
|
CA
|
A:SER398
|
4.7
|
19.4
|
1.0
|
|
CB
|
A:ASP404
|
4.7
|
18.9
|
1.0
|
|
CB
|
A:SER398
|
4.7
|
17.4
|
1.0
|
|
O
|
A:HOH639
|
4.7
|
20.8
|
1.0
|
|
CA
|
A:ASP379
|
4.8
|
23.6
|
1.0
|
|
Calcium binding site 5 out
of 8 in 6ixx
Go back to
Calcium Binding Sites List in 6ixx
Calcium binding site 5 out
of 8 in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca505
b:18.0
occ:1.00
|
OE1
|
A:GLN410
|
2.2
|
20.7
|
1.0
|
|
OD2
|
A:ASP388
|
2.3
|
16.7
|
1.0
|
|
O
|
A:GLY384
|
2.4
|
16.2
|
1.0
|
|
O
|
A:GLY386
|
2.4
|
16.1
|
1.0
|
|
O
|
A:HOH610
|
2.5
|
15.7
|
1.0
|
|
OD1
|
A:ASP414
|
2.6
|
15.9
|
1.0
|
|
CD
|
A:GLN410
|
3.4
|
22.6
|
1.0
|
|
CG
|
A:ASP414
|
3.4
|
20.7
|
1.0
|
|
OD2
|
A:ASP414
|
3.4
|
19.6
|
1.0
|
|
CG
|
A:ASP388
|
3.5
|
18.0
|
1.0
|
|
C
|
A:GLY386
|
3.5
|
21.9
|
1.0
|
|
C
|
A:GLY384
|
3.5
|
16.3
|
1.0
|
|
C
|
A:SER385
|
3.7
|
20.8
|
1.0
|
|
O
|
A:SER385
|
3.9
|
16.3
|
1.0
|
|
N
|
A:GLY386
|
4.0
|
22.7
|
1.0
|
|
N
|
A:ASP388
|
4.1
|
15.5
|
1.0
|
|
CA
|
A:SER385
|
4.1
|
16.8
|
1.0
|
|
CB
|
A:ASP388
|
4.2
|
17.7
|
1.0
|
|
C
|
A:GLY383
|
4.2
|
17.2
|
1.0
|
|
CG
|
A:GLN410
|
4.2
|
19.2
|
1.0
|
|
N
|
A:GLY384
|
4.3
|
16.0
|
1.0
|
|
N
|
A:SER385
|
4.3
|
16.6
|
1.0
|
|
NE2
|
A:GLN410
|
4.3
|
20.2
|
1.0
|
|
CA
|
A:GLY386
|
4.4
|
18.4
|
1.0
|
|
OD1
|
A:ASP388
|
4.4
|
21.0
|
1.0
|
|
N
|
A:SER387
|
4.4
|
16.1
|
1.0
|
|
CA
|
A:GLY383
|
4.5
|
15.5
|
1.0
|
|
CD2
|
A:LEU413
|
4.5
|
24.5
|
1.0
|
|
CA
|
A:GLY384
|
4.5
|
16.2
|
1.0
|
|
O
|
A:GLY383
|
4.6
|
15.7
|
1.0
|
|
CA
|
A:SER387
|
4.6
|
15.9
|
1.0
|
|
CB
|
A:GLN410
|
4.8
|
16.5
|
1.0
|
|
CA
|
A:CA501
|
4.8
|
19.4
|
1.0
|
|
C
|
A:SER387
|
4.8
|
15.6
|
1.0
|
|
CA
|
A:ASP388
|
4.8
|
15.8
|
1.0
|
|
CB
|
A:ASP414
|
4.9
|
17.9
|
1.0
|
|
Calcium binding site 6 out
of 8 in 6ixx
Go back to
Calcium Binding Sites List in 6ixx
Calcium binding site 6 out
of 8 in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca506
b:24.1
occ:1.00
|
OD1
|
A:ASP304
|
2.3
|
27.2
|
1.0
|
|
O
|
A:GLY301
|
2.3
|
24.7
|
1.0
|
|
O
|
A:GLY269
|
2.3
|
30.9
|
1.0
|
|
O
|
A:ARG267
|
2.3
|
25.7
|
1.0
|
|
OD2
|
A:ASP299
|
2.4
|
23.4
|
1.0
|
|
OG1
|
A:THR271
|
2.6
|
24.3
|
1.0
|
|
OD1
|
A:ASP299
|
2.6
|
23.8
|
1.0
|
|
CG
|
A:ASP299
|
2.8
|
35.5
|
1.0
|
|
CG
|
A:ASP304
|
3.1
|
22.1
|
1.0
|
|
OD2
|
A:ASP304
|
3.3
|
22.2
|
1.0
|
|
CB
|
A:THR271
|
3.5
|
23.4
|
1.0
|
|
C
|
A:GLY301
|
3.5
|
27.0
|
1.0
|
|
C
|
A:ARG267
|
3.5
|
26.6
|
1.0
|
|
C
|
A:GLY269
|
3.5
|
26.5
|
1.0
|
|
N
|
A:THR271
|
3.8
|
23.3
|
1.0
|
|
N
|
A:GLY269
|
4.1
|
28.2
|
1.0
|
|
C
|
A:ALA268
|
4.1
|
31.8
|
1.0
|
|
N
|
A:GLY301
|
4.2
|
25.4
|
1.0
|
|
CB
|
A:ARG267
|
4.3
|
25.9
|
1.0
|
|
CA
|
A:THR271
|
4.3
|
23.2
|
1.0
|
|
C
|
A:ASP270
|
4.3
|
33.7
|
1.0
|
|
CA
|
A:GLY302
|
4.3
|
27.2
|
1.0
|
|
CB
|
A:ASP299
|
4.3
|
29.0
|
1.0
|
|
N
|
A:GLY302
|
4.3
|
31.2
|
1.0
|
|
N
|
A:ALA268
|
4.4
|
30.7
|
1.0
|
|
CB
|
A:ASP304
|
4.4
|
21.2
|
1.0
|
|
CA
|
A:ALA268
|
4.4
|
29.1
|
1.0
|
|
CA
|
A:ASP270
|
4.4
|
30.9
|
1.0
|
|
N
|
A:ASP270
|
4.4
|
25.1
|
1.0
|
|
CA
|
A:GLY269
|
4.4
|
27.6
|
1.0
|
|
CA
|
A:ARG267
|
4.5
|
26.9
|
1.0
|
|
CA
|
A:GLY301
|
4.5
|
29.5
|
1.0
|
|
O
|
A:ALA268
|
4.5
|
33.6
|
1.0
|
|
C
|
A:GLY302
|
4.6
|
23.8
|
1.0
|
|
O
|
A:HOH689
|
4.6
|
26.6
|
1.0
|
|
O
|
A:HOH708
|
4.7
|
24.4
|
1.0
|
|
CG2
|
A:THR271
|
4.7
|
28.5
|
1.0
|
|
O
|
A:GLY302
|
4.7
|
24.4
|
1.0
|
|
OH
|
A:TYR273
|
4.9
|
28.5
|
1.0
|
|
O
|
A:HOH694
|
4.9
|
34.7
|
1.0
|
|
N
|
A:GLY300
|
4.9
|
28.2
|
1.0
|
|
Calcium binding site 7 out
of 8 in 6ixx
Go back to
Calcium Binding Sites List in 6ixx
Calcium binding site 7 out
of 8 in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca507
b:25.1
occ:1.00
|
O
|
A:GLY302
|
2.2
|
24.4
|
1.0
|
|
O
|
A:HOH708
|
2.4
|
24.4
|
1.0
|
|
OE2
|
A:GLU343
|
2.4
|
22.6
|
1.0
|
|
O
|
A:THR341
|
2.4
|
24.2
|
1.0
|
|
OD2
|
A:ASP304
|
2.5
|
22.2
|
1.0
|
|
O
|
A:HOH776
|
2.5
|
23.2
|
1.0
|
|
OE1
|
A:GLU343
|
2.6
|
21.5
|
1.0
|
|
CD
|
A:GLU343
|
2.9
|
23.0
|
1.0
|
|
C
|
A:GLY302
|
3.4
|
23.8
|
1.0
|
|
CG
|
A:ASP304
|
3.6
|
22.1
|
1.0
|
|
C
|
A:THR341
|
3.6
|
24.5
|
1.0
|
|
N
|
A:GLY302
|
4.1
|
31.2
|
1.0
|
|
C
|
A:GLY301
|
4.1
|
27.0
|
1.0
|
|
N
|
A:ASP304
|
4.2
|
21.1
|
1.0
|
|
CB
|
A:ASP304
|
4.3
|
21.2
|
1.0
|
|
N
|
A:ASN303
|
4.4
|
26.5
|
1.0
|
|
OD1
|
A:ASP299
|
4.4
|
23.8
|
1.0
|
|
CA
|
A:GLY302
|
4.4
|
27.2
|
1.0
|
|
O
|
A:HOH739
|
4.4
|
27.4
|
1.0
|
|
CG
|
A:GLU343
|
4.4
|
20.2
|
1.0
|
|
O
|
A:GLY301
|
4.4
|
24.7
|
1.0
|
|
CA
|
A:ASN303
|
4.4
|
22.0
|
1.0
|
|
OD1
|
A:ASP304
|
4.4
|
27.2
|
1.0
|
|
N
|
A:ILE342
|
4.5
|
25.1
|
1.0
|
|
CA
|
A:ILE342
|
4.5
|
19.7
|
1.0
|
|
CB
|
A:THR341
|
4.5
|
23.0
|
1.0
|
|
CA
|
A:GLY301
|
4.6
|
29.5
|
1.0
|
|
CA
|
A:THR341
|
4.6
|
23.9
|
1.0
|
|
C
|
A:ASN303
|
4.7
|
24.1
|
1.0
|
|
CG2
|
A:THR341
|
4.8
|
24.2
|
1.0
|
|
N
|
A:GLU343
|
4.8
|
21.3
|
1.0
|
|
CA
|
A:ASP304
|
4.9
|
21.0
|
1.0
|
|
N
|
A:THR341
|
5.0
|
23.4
|
1.0
|
|
Calcium binding site 8 out
of 8 in 6ixx
Go back to
Calcium Binding Sites List in 6ixx
Calcium binding site 8 out
of 8 in the Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of A Complex Between Psychrophilic Marine Protease Mp and Its Inhibitor Lupi within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca508
b:44.9
occ:1.00
|
OD1
|
A:ASN68
|
2.3
|
50.1
|
1.0
|
|
O
|
A:VAL72
|
2.3
|
42.0
|
1.0
|
|
OD2
|
A:ASP131
|
2.4
|
47.0
|
1.0
|
|
OD1
|
A:ASP66
|
2.4
|
56.4
|
1.0
|
|
OD1
|
A:ASP70
|
2.5
|
45.0
|
1.0
|
|
OD1
|
A:ASN74
|
2.6
|
50.7
|
1.0
|
|
CG
|
A:ASP131
|
3.1
|
51.5
|
1.0
|
|
OD1
|
A:ASP131
|
3.2
|
52.2
|
1.0
|
|
CG
|
A:ASN68
|
3.2
|
52.0
|
1.0
|
|
CG
|
A:ASP70
|
3.4
|
50.0
|
1.0
|
|
C
|
A:VAL72
|
3.5
|
49.5
|
1.0
|
|
CG
|
A:ASP66
|
3.6
|
53.5
|
1.0
|
|
ND2
|
A:ASN68
|
3.7
|
52.3
|
1.0
|
|
OD2
|
A:ASP70
|
3.7
|
46.8
|
1.0
|
|
CG
|
A:ASN74
|
3.8
|
59.1
|
1.0
|
|
N
|
A:ASN74
|
4.1
|
43.2
|
1.0
|
|
CA
|
A:ASP66
|
4.1
|
44.4
|
1.0
|
|
CB
|
A:ASP66
|
4.3
|
43.7
|
1.0
|
|
N
|
A:VAL72
|
4.3
|
55.9
|
1.0
|
|
N
|
A:ASN68
|
4.4
|
52.1
|
1.0
|
|
CA
|
A:ILE73
|
4.4
|
44.2
|
1.0
|
|
N
|
A:ILE73
|
4.4
|
45.9
|
1.0
|
|
C
|
A:ASP66
|
4.4
|
51.6
|
1.0
|
|
CA
|
A:VAL72
|
4.4
|
48.8
|
1.0
|
|
N
|
A:ASP70
|
4.4
|
55.8
|
1.0
|
|
OD2
|
A:ASP66
|
4.4
|
52.0
|
1.0
|
|
CB
|
A:ASN68
|
4.5
|
51.1
|
1.0
|
|
CB
|
A:ASP131
|
4.6
|
52.0
|
1.0
|
|
N
|
A:LEU67
|
4.6
|
51.6
|
1.0
|
|
CB
|
A:ASN74
|
4.6
|
51.5
|
1.0
|
|
N
|
A:GLY69
|
4.7
|
56.0
|
1.0
|
|
ND2
|
A:ASN74
|
4.7
|
69.0
|
1.0
|
|
CB
|
A:ASP70
|
4.7
|
57.3
|
1.0
|
|
C
|
A:ILE73
|
4.7
|
43.6
|
1.0
|
|
CA
|
A:ASN68
|
4.8
|
52.1
|
1.0
|
|
CB
|
A:VAL72
|
4.8
|
43.3
|
1.0
|
|
C
|
A:ASN68
|
4.8
|
54.9
|
1.0
|
|
CG1
|
A:VAL72
|
4.9
|
46.8
|
1.0
|
|
O
|
A:ASP66
|
5.0
|
48.4
|
1.0
|
|
CA
|
A:ASP70
|
5.0
|
60.1
|
1.0
|
|
CA
|
A:ASN74
|
5.0
|
47.8
|
1.0
|
|
Reference:
J.H.Hao,
J.H.Hao,
L.H.Zhang.
N/A N/A.
Page generated: Wed Jul 9 15:01:55 2025
|
