Calcium in PDB 6j02: Crystal Structure of the Srcr Domain of Mouse SCARA1

The structure of Crystal Structure of the Srcr Domain of Mouse SCARA1, PDB code: 6j02 was solved by C.Cheng, Z.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.09 / 1.80
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	39.274, 42.881, 45.469, 91.03, 110.81, 117.35
R / Rfree (%)	18 / 21

The binding sites of Calcium atom in the Crystal Structure of the Srcr Domain of Mouse SCARA1 (pdb code 6j02). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Srcr Domain of Mouse SCARA1, PDB code: 6j02:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of the Srcr Domain of Mouse SCARA1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Srcr Domain of Mouse SCARA1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:23.8 occ:1.00 OE2 A:GLU99 2.2 26.2 1.0 OD1 A:ASP32 2.3 22.6 1.0 OD1 A:ASP33 2.3 25.0 1.0 O A:HOH377 2.3 29.3 1.0 O A:HOH331 2.6 25.3 1.0 HG2 A:GLU99 3.3 32.2 1.0 CG A:ASP32 3.3 23.0 1.0 CD A:GLU99 3.3 27.4 1.0 HA A:ASP33 3.4 33.1 1.0 CG A:ASP33 3.5 28.1 1.0 HB3 A:GLU99 3.5 31.4 1.0 OD2 A:ASP32 3.7 26.5 1.0 CG A:GLU99 3.8 26.5 1.0 CA A:ASP33 4.1 27.2 1.0 N A:ASP33 4.1 25.0 1.0 CB A:GLU99 4.2 25.8 1.0 H A:ASP33 4.2 30.5 1.0 OD2 A:ASP33 4.3 29.8 1.0 O A:HOH327 4.4 32.0 1.0 CB A:ASP33 4.4 28.4 1.0 OE1 A:GLU99 4.4 28.1 1.0 C A:ASP32 4.5 25.8 1.0 H A:ASP32 4.5 25.2 1.0 SG A:CYS31 4.6 26.7 1.0 HG3 A:GLU99 4.7 32.2 1.0 CB A:ASP32 4.7 22.7 1.0 HB2 A:GLU99 4.8 31.4 1.0 O A:ASP32 4.9 20.1 1.0 HA A:GLU99 4.9 34.2 1.0 CA A:ASP32 4.9 20.6 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of the Srcr Domain of Mouse SCARA1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Srcr Domain of Mouse SCARA1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:23.4 occ:1.00 OD1 B:ASP32 2.3 24.7 1.0 OE2 B:GLU99 2.3 27.6 1.0 OD1 B:ASP33 2.3 27.8 1.0 O B:HOH380 2.4 30.4 1.0 O B:HOH313 2.5 24.8 1.0 CG B:ASP32 3.3 22.4 1.0 HB3 B:GLU99 3.4 30.9 1.0 CD B:GLU99 3.4 28.2 1.0 HA B:ASP33 3.4 31.5 1.0 HG2 B:GLU99 3.5 30.3 1.0 CG B:ASP33 3.5 30.0 1.0 OD2 B:ASP32 3.7 26.7 1.0 CG B:GLU99 3.8 24.8 1.0 CB B:GLU99 4.1 25.4 1.0 CA B:ASP33 4.1 25.8 1.0 N B:ASP33 4.2 22.8 1.0 OD2 B:ASP33 4.3 27.0 1.0 H B:ASP33 4.4 27.8 1.0 H B:ASP32 4.4 29.6 1.0 CB B:ASP33 4.4 23.7 1.0 C B:ASP32 4.5 21.5 1.0 OE1 B:GLU99 4.5 26.6 1.0 HB2 B:GLU99 4.6 30.9 1.0 SG B:CYS31 4.7 27.2 1.0 CB B:ASP32 4.7 21.3 1.0 HG3 B:GLU99 4.8 30.3 1.0 O B:HOH336 4.9 48.7 1.0 O B:ASP32 4.9 21.4 1.0 HA B:GLU99 4.9 32.7 1.0 CA B:ASP32 4.9 22.0 1.0 N B:ASP32 5.0 24.2 1.0

C.Cheng, Z.Hu, L.Cao, C.Peng, Y.He. The Scavenger Receptor SCARA1(CD204) Recognizes Dead Cells Through Spectrin. J.Biol.Chem. 2019.
ISSN: ESSN 1083-351X
PubMed: 31653705
DOI: 10.1074/JBC.RA119.010110