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Calcium in PDB 6jh8: Crystal Structure of An Actin Monomer in Complex with A Chimeric Peptide of Cordon-Bleu WH2 Mutant and Mim.

Protein crystallography data

The structure of Crystal Structure of An Actin Monomer in Complex with A Chimeric Peptide of Cordon-Bleu WH2 Mutant and Mim., PDB code: 6jh8 was solved by C.P.M.Scipion, R.C.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.47 / 2.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 195.439, 56.073, 38.432, 90.00, 93.40, 90.00
R / Rfree (%) 17.5 / 22.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of An Actin Monomer in Complex with A Chimeric Peptide of Cordon-Bleu WH2 Mutant and Mim. (pdb code 6jh8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of An Actin Monomer in Complex with A Chimeric Peptide of Cordon-Bleu WH2 Mutant and Mim., PDB code: 6jh8:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6jh8

Go back to Calcium Binding Sites List in 6jh8
Calcium binding site 1 out of 2 in the Crystal Structure of An Actin Monomer in Complex with A Chimeric Peptide of Cordon-Bleu WH2 Mutant and Mim.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An Actin Monomer in Complex with A Chimeric Peptide of Cordon-Bleu WH2 Mutant and Mim. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:28.0
occ:1.00
O1B A:ATP401 2.2 23.3 1.0
O A:HOH584 2.3 27.6 1.0
O A:HOH571 2.3 24.8 1.0
O A:HOH562 2.4 21.7 1.0
O2G A:ATP401 2.5 31.9 1.0
O A:HOH520 2.6 24.3 1.0
O A:HOH570 2.9 28.3 1.0
PB A:ATP401 3.5 23.6 1.0
PG A:ATP401 3.6 25.4 1.0
O3G A:ATP401 3.9 25.1 1.0
O3B A:ATP401 4.0 22.9 1.0
O3A A:ATP401 4.0 25.1 1.0
O A:HOH552 4.1 22.7 1.0
O1A A:ATP401 4.2 25.6 1.0
OE1 A:GLN137 4.3 28.5 1.0
CA A:GLY13 4.3 20.1 1.0
O A:HOH540 4.3 27.6 1.0
NZ A:LYS18 4.5 19.1 1.0
CD A:GLN137 4.5 30.6 1.0
PA A:ATP401 4.6 24.2 1.0
OD1 A:ASP11 4.6 22.6 1.0
OD2 A:ASP11 4.7 25.1 1.0
OD2 A:ASP154 4.8 33.7 1.0
OD1 A:ASP154 4.8 32.5 1.0
CG A:GLN137 4.8 25.9 1.0
O2B A:ATP401 4.8 24.4 1.0
O1G A:ATP401 4.8 27.9 1.0
NE2 A:GLN137 4.9 31.7 1.0
O2A A:ATP401 4.9 23.7 1.0
O A:HOH585 5.0 42.6 1.0

Calcium binding site 2 out of 2 in 6jh8

Go back to Calcium Binding Sites List in 6jh8
Calcium binding site 2 out of 2 in the Crystal Structure of An Actin Monomer in Complex with A Chimeric Peptide of Cordon-Bleu WH2 Mutant and Mim.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of An Actin Monomer in Complex with A Chimeric Peptide of Cordon-Bleu WH2 Mutant and Mim. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:91.4
occ:1.00
O A:HOH673 2.2 45.7 1.0
O A:HOH521 2.3 26.6 1.0
O A:HOH671 2.3 50.7 1.0
OE1 A:GLN263 2.4 26.5 1.0
OG A:SER265 2.6 30.6 1.0
CD A:GLN263 3.3 33.2 1.0
CB A:SER265 3.6 28.2 1.0
NE2 A:GLN263 3.6 36.0 1.0
N A:SER265 4.0 29.2 1.0
CA A:SER265 4.3 25.7 1.0
O A:SER271 4.4 29.7 1.0
CD A:PRO264 4.5 25.0 1.0
O A:MET269 4.5 28.2 1.0
OE1 A:GLU270 4.6 55.0 1.0
N A:PRO264 4.7 29.0 1.0
CG A:GLN263 4.7 25.5 1.0

Reference:

C.P.M.Scipion, R.C.Robinson. Design of An Actin-Severing Peptide. To Be Published.
Page generated: Tue Jul 16 09:48:38 2024

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