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Calcium in PDB 6jhf: Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii

Enzymatic activity of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii

All present enzymatic activity of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii:
3.2.1.41;

Protein crystallography data

The structure of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii, PDB code: 6jhf was solved by S.W.Wu, S.Q.Yang, Z.Qin, X.You, P.Huang, Z.Q.Jiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.29 / 1.71
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.395, 98.583, 142.019, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 18.2

Other elements in 6jhf:

The structure of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii (pdb code 6jhf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii, PDB code: 6jhf:

Calcium binding site 1 out of 1 in 6jhf

Go back to Calcium Binding Sites List in 6jhf
Calcium binding site 1 out of 1 in the Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca701

b:8.9
occ:1.00
 O A:TYR217 2.3 9.4 1.0
OD1 A:ASP216 2.4 8.9 1.0
OE2 A:GLU224 2.4 9.8 1.0
O A:HOH897 2.4 12.7 1.0
O A:HOH959 2.4 16.1 1.0
OE1 A:GLU245 2.5 9.4 1.0
O A:HOH1319 2.6 16.9 1.0
CD A:GLU245 3.4 10.9 1.0
CD A:GLU224 3.4 11.8 1.0
CG A:ASP216 3.5 8.4 1.0
C A:TYR217 3.5 10.1 1.0
OE2 A:GLU245 3.5 8.4 1.0
N A:TYR217 3.7 8.2 1.0
O A:HOH1143 3.9 10.4 1.0
CG A:GLU224 4.0 9.0 1.0
OD2 A:ASP216 4.1 8.6 1.0
CA A:TYR217 4.2 8.7 1.0
C A:ASP216 4.3 10.3 1.0
N A:GLY246 4.4 8.2 1.0
OE1 A:GLU224 4.4 11.5 1.0
O A:SER218 4.5 9.9 1.0
C A:SER218 4.5 10.2 1.0
CA A:ASP216 4.5 7.0 1.0
N A:SER218 4.5 9.2 1.0
CB A:ASP216 4.6 6.3 1.0
O A:VAL222 4.6 10.3 1.0
CD1 A:TYR217 4.7 11.4 1.0
OD1 A:ASN125 4.8 11.3 1.0
CG A:GLU245 4.8 7.5 1.0
CA A:SER218 4.8 12.4 1.0
N A:GLN219 4.9 12.0 1.0
CG A:TYR217 4.9 10.4 1.0
CA A:GLU245 4.9 7.5 1.0
CA A:ASN125 5.0 8.7 1.0

Reference:

S.W.Wu, S.Q.Yang, Z.Qin, X.You, P.Huang, Z.Q.Jiang. Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii To Be Published.
Page generated: Wed Jul 9 15:07:21 2025

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