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Calcium in PDB 6jhg: Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121

Enzymatic activity of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121

All present enzymatic activity of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121:
3.2.1.41;

Protein crystallography data

The structure of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121, PDB code: 6jhg was solved by S.W.Wu, S.Q.Yang, Z.Qin, X.You, P.Huang, Z.Q.Jiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.63 / 1.89
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.457, 78.834, 116.038, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 20.1

Other elements in 6jhg:

The structure of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121 (pdb code 6jhg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121, PDB code: 6jhg:

Calcium binding site 1 out of 1 in 6jhg

Go back to Calcium Binding Sites List in 6jhg
Calcium binding site 1 out of 1 in the Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca701

b:23.0
occ:1.00
 O A:TYR217 2.3 23.8 1.0
OD1 A:ASP216 2.3 22.4 1.0
O A:HOH1186 2.3 34.9 1.0
OE1 A:GLU245 2.4 18.9 1.0
OE2 A:GLU224 2.4 24.2 1.0
O A:HOH874 2.5 23.2 1.0
CD A:GLU245 3.3 18.9 1.0
CD A:GLU224 3.4 24.2 1.0
CG A:ASP216 3.4 22.9 1.0
C A:TYR217 3.4 23.4 1.0
OE2 A:GLU245 3.4 22.7 1.0
N A:TYR217 3.7 21.2 1.0
CG A:GLU224 3.9 21.5 1.0
O A:HOH996 3.9 23.7 1.0
OD2 A:ASP216 4.0 26.8 1.0
CA A:TYR217 4.2 21.6 1.0
C A:ASP216 4.3 21.6 1.0
N A:GLY246 4.4 22.7 1.0
OE1 A:GLU224 4.4 24.7 1.0
CA A:ASP216 4.5 20.2 1.0
N A:SER218 4.5 23.0 1.0
C A:SER218 4.5 30.7 1.0
CB A:ASP216 4.5 21.9 1.0
O A:SER218 4.6 22.5 1.0
CG A:GLU245 4.7 13.9 1.0
O A:VAL222 4.7 23.8 1.0
CD1 A:TYR217 4.7 17.8 1.0
OE1 A:GLN239 4.8 42.0 1.0
CA A:SER218 4.8 29.4 1.0
OD1 A:ASN125 4.8 26.8 1.0
CA A:GLU245 4.8 19.4 1.0
N A:GLN219 4.9 24.7 1.0
CG A:TYR217 4.9 20.4 1.0

Reference:

S.W.Wu, S.Q.Yang, Z.Qin, X.You, P.Huang, Z.Q.Jiang. Crystal Structure of Apo Pullulanase From Paenibacillus Barengoltzii in Space Group P212121 To Be Published.
Page generated: Wed Jul 9 15:07:25 2025

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