Calcium in PDB 6jja: Cryo-Em Structure of Giant Freshwater Prawn Macrobrachium Rosenbergii Extra Small Virus (Xsv) Vlp

The binding sites of Calcium atom in the Cryo-Em Structure of Giant Freshwater Prawn Macrobrachium Rosenbergii Extra Small Virus (Xsv) Vlp (pdb code 6jja). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Giant Freshwater Prawn Macrobrachium Rosenbergii Extra Small Virus (Xsv) Vlp, PDB code: 6jja:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of Giant Freshwater Prawn Macrobrachium Rosenbergii Extra Small Virus (Xsv) Vlp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Giant Freshwater Prawn Macrobrachium Rosenbergii Extra Small Virus (Xsv) Vlp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:35.0 occ:1.00 OD1 A:ASN50 1.7 33.0 1.0 O A:GLU173 2.3 38.5 1.0 OD2 A:ASP171 2.4 32.9 1.0 CG A:ASN50 2.7 33.0 1.0 HD21 A:ASN50 3.0 33.0 1.0 ND2 A:ASN50 3.3 33.0 1.0 HB3 A:ASP171 3.3 32.9 1.0 CG A:ASP171 3.4 32.9 1.0 C A:GLU173 3.6 38.5 1.0 CB A:ASP171 3.8 32.9 1.0 HB2 A:GLU173 3.9 38.5 1.0 HA A:GLN174 4.0 40.8 1.0 O A:GLY49 4.0 34.1 1.0 CB A:ASN50 4.0 33.0 1.0 HA A:ASN50 4.1 33.0 1.0 HD22 A:ASN50 4.1 33.0 1.0 HB3 A:ASN50 4.2 33.0 1.0 HB2 A:ASP171 4.3 32.9 1.0 H A:GLU173 4.3 38.5 1.0 CA A:GLU173 4.4 38.5 1.0 OD1 A:ASP171 4.4 32.9 1.0 N A:GLU173 4.5 38.5 1.0 CA A:ASN50 4.5 33.0 1.0 N A:GLN174 4.5 40.8 1.0 C A:GLY49 4.6 34.1 1.0 CB A:GLU173 4.6 38.5 1.0 CA A:GLN174 4.6 40.8 1.0 HB2 A:ASN50 4.7 33.0 1.0 N A:ASN50 4.8 33.0 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of Giant Freshwater Prawn Macrobrachium Rosenbergii Extra Small Virus (Xsv) Vlp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Giant Freshwater Prawn Macrobrachium Rosenbergii Extra Small Virus (Xsv) Vlp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:35.0 occ:1.00 OD1 A:ASN31 2.9 43.0 1.0 HD22 A:ASN31 3.9 43.0 1.0 CG A:ASN31 3.9 43.0 1.0 ND2 A:ASN31 4.3 43.0 1.0

W.H.Chang, C.H.Wang, H.H.Lin, S.Y.Lin, S.C.Chong, Y.Y.Wu. Cryo-Em Structure of Giant Freshwater Prawn Macrobrachium Rosenbergii Extra Small Virus (Xsv) Vlp To Be Published.