Calcium in PDB 6jk0: Crystal Structure of YAP1 and Dendrin Complex

The structure of Crystal Structure of YAP1 and Dendrin Complex, PDB code: 6jk0 was solved by Z.Lin, Z.Yang, Z.Ji, M.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.06 / 3.10
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.606, 94.606, 174.397, 90.00, 90.00, 120.00
R / Rfree (%)	21.3 / 24.3

The binding sites of Calcium atom in the Crystal Structure of YAP1 and Dendrin Complex (pdb code 6jk0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of YAP1 and Dendrin Complex, PDB code: 6jk0:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of YAP1 and Dendrin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of YAP1 and Dendrin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:52.2 occ:1.00 N A:VAL231 4.1 54.2 1.0 O A:VAL231 4.5 51.5 1.0 CB A:VAL231 4.7 53.5 1.0 CA A:GLU230 4.7 56.2 1.0 CA A:CA302 4.8 50.6 1.0 OE2 A:GLU163 4.8 73.6 1.0 CB A:GLU230 4.8 55.5 1.0 CA A:VAL231 4.9 53.7 1.0 C A:GLU230 4.9 55.4 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of YAP1 and Dendrin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of YAP1 and Dendrin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:50.6 occ:1.00 OE2 A:GLU163 3.3 73.6 1.0 OE1 A:GLU163 3.6 58.2 1.0 CD A:GLU163 3.8 62.7 1.0 OE2 A:GLU230 4.1 64.8 1.0 CE2 A:TRP243 4.6 50.2 1.0 CZ2 A:TRP243 4.6 51.5 1.0 CH2 A:TRP243 4.6 52.1 1.0 CD2 A:TRP243 4.6 49.5 1.0 CZ3 A:TRP243 4.6 51.4 1.0 CE3 A:TRP243 4.6 50.1 1.0 CD1 A:LEU175 4.7 47.6 1.0 CA A:CA301 4.8 52.2 1.0

Z.Lin, Z.Yang, R.Xie, Z.Ji, K.Guan, M.Zhang. Decoding Ww Domain Tandem-Mediated Target Recognitions in Tissue Growth and Cell Polarity. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 31486770
DOI: 10.7554/ELIFE.49439