Calcium in PDB 6jt5: Crystal Structure of Pqq Doamin of Pyranose Dehydrogenase From Coprinopsis Cinerea: Apo-From

The structure of Crystal Structure of Pqq Doamin of Pyranose Dehydrogenase From Coprinopsis Cinerea: Apo-From, PDB code: 6jt5 was solved by K.Takeda, T.Ishida, M.Yoshida, M.Samejima, H.Ohno, K.Igarashi, N.Nakamura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.75 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.298, 47.851, 69.375, 90.00, 115.55, 90.00
R / Rfree (%)	10.5 / 13.4

The binding sites of Calcium atom in the Crystal Structure of Pqq Doamin of Pyranose Dehydrogenase From Coprinopsis Cinerea: Apo-From (pdb code 6jt5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Pqq Doamin of Pyranose Dehydrogenase From Coprinopsis Cinerea: Apo-From, PDB code: 6jt5:

Calcium binding site 1 out of 1 in the Crystal Structure of Pqq Doamin of Pyranose Dehydrogenase From Coprinopsis Cinerea: Apo-From


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Pqq Doamin of Pyranose Dehydrogenase From Coprinopsis Cinerea: Apo-From within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca702 b:6.1 occ:1.00 O3 A:SO4703 2.3 7.3 1.0 OD1 A:ASP451 2.3 7.1 1.0 O1 A:FMT704 2.4 7.1 1.0 O A:HOH926 2.4 6.9 1.0 O A:HOH1022 2.4 7.2 1.0 O A:SER449 2.4 6.9 1.0 C A:FMT704 3.4 7.5 1.0 CG A:ASP451 3.5 7.7 1.0 C A:SER449 3.5 6.8 1.0 S A:SO4703 3.6 7.6 1.0 O2 A:SO4703 4.0 9.0 1.0 O A:HOH903 4.0 8.7 1.0 OD2 A:ASP451 4.0 7.8 1.0 O A:LEU450 4.1 6.9 1.0 N A:SER449 4.1 6.0 1.0 NH1 A:ARG430 4.1 5.9 1.0 C A:LEU450 4.1 6.3 1.0 ND1 A:HIS539 4.2 6.7 1.0 O1 A:SO4703 4.2 8.4 1.0 CA A:SER449 4.4 6.0 1.0 N A:ASP451 4.4 6.5 1.0 N A:LEU450 4.4 6.1 1.0 CZ A:ARG430 4.5 6.3 1.0 C A:ASN448 4.5 6.7 1.0 O2 A:FMT704 4.5 7.4 1.0 NH2 A:ARG430 4.6 6.7 1.0 CB A:ASP451 4.7 7.7 1.0 CA A:ASP451 4.7 7.1 1.0 CA A:LEU450 4.7 6.4 1.0 O A:HOH894 4.8 6.2 1.0 CE1 A:HIS539 4.8 6.6 1.0 O4 A:SO4703 4.8 8.0 1.0 OE2 A:GLU471 4.8 6.8 1.0 CB A:ASN448 4.9 7.6 1.0 OE1 A:GLU471 4.9 6.4 1.0 O A:ASN448 5.0 6.1 1.0

K.Takeda, T.Ishida, M.Yoshida, M.Samejima, H.Ohno, K.Igarashi, N.Nakamura. The Crystal Structure of the Catalytic Domain and the Cytochromebdomain in A Eukaryotic Pqq-Dependent Dehydrogenase. Appl.Environ.Microbiol. 2019.
ISSN: ESSN 1098-5336
PubMed: 31604769
DOI: 10.1128/AEM.01692-19