Calcium in PDB 6klo: Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
(pdb code 6klo). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem, PDB code: 6klo:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 6klo
Go back to
Calcium Binding Sites List in 6klo
Calcium binding site 1 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:36.0
occ:1.00
|
O
|
A:GLU262
|
2.3
|
39.9
|
1.0
|
|
OE2
|
A:GLU230
|
2.3
|
39.9
|
1.0
|
|
OD2
|
A:ASP221
|
2.4
|
40.1
|
1.0
|
|
O
|
A:SER259
|
2.4
|
39.5
|
1.0
|
|
OD2
|
A:ASP272
|
2.5
|
35.0
|
1.0
|
|
OD2
|
A:ASP223
|
2.6
|
40.1
|
1.0
|
|
OE1
|
A:GLU230
|
2.6
|
39.9
|
1.0
|
|
CD
|
A:GLU230
|
2.8
|
39.9
|
1.0
|
|
C
|
A:GLU262
|
3.4
|
39.9
|
1.0
|
|
CG
|
A:ASP221
|
3.5
|
40.1
|
1.0
|
|
C
|
A:SER259
|
3.6
|
39.5
|
1.0
|
|
CG
|
A:ASP223
|
3.6
|
40.1
|
1.0
|
|
CG
|
A:ASP272
|
3.7
|
35.0
|
1.0
|
|
CA
|
A:CA1002
|
4.0
|
36.1
|
1.0
|
|
OD1
|
A:ASP223
|
4.1
|
40.1
|
1.0
|
|
OD1
|
A:ASP221
|
4.1
|
40.1
|
1.0
|
|
CA
|
A:TYR260
|
4.2
|
40.6
|
1.0
|
|
CA
|
A:SER263
|
4.2
|
37.0
|
1.0
|
|
N
|
A:GLU262
|
4.2
|
39.9
|
1.0
|
|
N
|
A:SER263
|
4.2
|
37.0
|
1.0
|
|
CG
|
A:GLU230
|
4.3
|
39.9
|
1.0
|
|
CB
|
A:ASP272
|
4.3
|
35.0
|
1.0
|
|
N
|
A:TYR260
|
4.4
|
40.6
|
1.0
|
|
CA
|
A:GLU262
|
4.4
|
39.9
|
1.0
|
|
CB
|
A:SER258
|
4.4
|
38.4
|
1.0
|
|
OG1
|
A:THR265
|
4.5
|
34.3
|
1.0
|
|
C
|
A:TYR260
|
4.5
|
40.6
|
1.0
|
|
N
|
A:SER259
|
4.6
|
39.5
|
1.0
|
|
OD1
|
A:ASP272
|
4.6
|
35.0
|
1.0
|
|
CA
|
A:SER259
|
4.6
|
39.5
|
1.0
|
|
CB
|
A:ASP221
|
4.7
|
40.1
|
1.0
|
|
C
|
A:SER263
|
4.7
|
37.0
|
1.0
|
|
CB
|
A:ASP223
|
4.8
|
40.1
|
1.0
|
|
O
|
A:SER263
|
4.8
|
37.0
|
1.0
|
|
N
|
A:LEU261
|
4.9
|
40.6
|
1.0
|
|
Calcium binding site 2 out
of 14 in 6klo
Go back to
Calcium Binding Sites List in 6klo
Calcium binding site 2 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:36.1
occ:1.00
|
OD1
|
A:ASP221
|
2.3
|
40.1
|
1.0
|
|
OD1
|
A:ASP223
|
2.4
|
40.1
|
1.0
|
|
O
|
A:ILE225
|
2.4
|
39.3
|
1.0
|
|
OD1
|
A:ASP219
|
2.5
|
43.5
|
1.0
|
|
OE1
|
A:GLU230
|
2.9
|
39.9
|
1.0
|
|
CG
|
A:ASP221
|
3.2
|
40.1
|
1.0
|
|
CG
|
A:ASP223
|
3.3
|
40.1
|
1.0
|
|
OD2
|
A:ASP221
|
3.3
|
40.1
|
1.0
|
|
CD
|
A:GLU230
|
3.4
|
39.9
|
1.0
|
|
OD2
|
A:ASP223
|
3.5
|
40.1
|
1.0
|
|
C
|
A:ILE225
|
3.5
|
39.3
|
1.0
|
|
CG
|
A:ASP219
|
3.7
|
43.5
|
1.0
|
|
OE2
|
A:GLU230
|
3.9
|
39.9
|
1.0
|
|
CA
|
A:CA1001
|
4.0
|
36.0
|
1.0
|
|
OD1
|
A:ASP227
|
4.0
|
43.1
|
1.0
|
|
N
|
A:ILE225
|
4.2
|
39.3
|
1.0
|
|
CA
|
A:ILE225
|
4.2
|
39.3
|
1.0
|
|
CB
|
A:ILE225
|
4.3
|
39.3
|
1.0
|
|
OD2
|
A:ASP219
|
4.3
|
43.5
|
1.0
|
|
CG
|
A:GLU230
|
4.4
|
39.9
|
1.0
|
|
C
|
A:PRO226
|
4.4
|
42.4
|
1.0
|
|
O
|
A:PRO226
|
4.4
|
42.4
|
1.0
|
|
O
|
A:TYR260
|
4.5
|
40.6
|
1.0
|
|
N
|
A:ASP221
|
4.5
|
40.1
|
1.0
|
|
N
|
A:ASP223
|
4.5
|
40.1
|
1.0
|
|
N
|
A:PRO226
|
4.6
|
42.4
|
1.0
|
|
CB
|
A:ASP221
|
4.6
|
40.1
|
1.0
|
|
CA
|
A:TYR260
|
4.6
|
40.6
|
1.0
|
|
CB
|
A:ASP223
|
4.7
|
40.1
|
1.0
|
|
N
|
A:ASP227
|
4.7
|
43.1
|
1.0
|
|
CA
|
A:ASP219
|
4.7
|
43.5
|
1.0
|
|
CA
|
A:PRO226
|
4.7
|
42.4
|
1.0
|
|
N
|
A:THR220
|
4.7
|
41.4
|
1.0
|
|
CB
|
A:ASP219
|
4.7
|
43.5
|
1.0
|
|
N
|
A:ASN222
|
4.9
|
42.3
|
1.0
|
|
CB
|
A:GLU230
|
4.9
|
39.9
|
1.0
|
|
C
|
A:TYR260
|
4.9
|
40.6
|
1.0
|
|
CA
|
A:ASP221
|
5.0
|
40.1
|
1.0
|
|
Calcium binding site 3 out
of 14 in 6klo
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Calcium Binding Sites List in 6klo
Calcium binding site 3 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1001
b:38.3
occ:1.00
|
OD2
|
B:ASP221
|
2.3
|
41.8
|
1.0
|
|
O
|
B:SER259
|
2.3
|
40.3
|
1.0
|
|
OD2
|
B:ASP272
|
2.3
|
36.4
|
1.0
|
|
O
|
B:GLU262
|
2.4
|
41.0
|
1.0
|
|
OD2
|
B:ASP223
|
2.5
|
41.8
|
1.0
|
|
OE1
|
B:GLU230
|
2.5
|
40.9
|
1.0
|
|
OE2
|
B:GLU230
|
2.7
|
40.9
|
1.0
|
|
CD
|
B:GLU230
|
2.9
|
40.9
|
1.0
|
|
CG
|
B:ASP272
|
3.5
|
36.4
|
1.0
|
|
CG
|
B:ASP221
|
3.5
|
41.8
|
1.0
|
|
C
|
B:SER259
|
3.5
|
40.3
|
1.0
|
|
CG
|
B:ASP223
|
3.5
|
41.8
|
1.0
|
|
C
|
B:GLU262
|
3.5
|
41.0
|
1.0
|
|
OG
|
B:SER258
|
3.9
|
40.0
|
1.0
|
|
CB
|
B:ASP272
|
4.0
|
36.4
|
1.0
|
|
OD1
|
B:ASP223
|
4.0
|
41.8
|
1.0
|
|
OG1
|
B:THR265
|
4.1
|
36.2
|
1.0
|
|
CA
|
B:SER263
|
4.1
|
38.7
|
1.0
|
|
N
|
B:SER263
|
4.3
|
38.7
|
1.0
|
|
OD1
|
B:ASP221
|
4.3
|
41.8
|
1.0
|
|
CA
|
B:TYR260
|
4.3
|
42.0
|
1.0
|
|
N
|
B:TYR260
|
4.4
|
42.0
|
1.0
|
|
N
|
B:SER259
|
4.4
|
40.3
|
1.0
|
|
CG
|
B:GLU230
|
4.4
|
40.9
|
1.0
|
|
OD1
|
B:ASP272
|
4.5
|
36.4
|
1.0
|
|
CB
|
B:ASP221
|
4.5
|
41.8
|
1.0
|
|
CA
|
B:SER259
|
4.5
|
40.3
|
1.0
|
|
CA
|
B:CA1002
|
4.5
|
40.7
|
1.0
|
|
C
|
B:SER263
|
4.5
|
38.7
|
1.0
|
|
N
|
B:GLU262
|
4.5
|
41.0
|
1.0
|
|
O
|
B:SER263
|
4.6
|
38.7
|
1.0
|
|
CB
|
B:SER258
|
4.6
|
40.0
|
1.0
|
|
CA
|
B:GLU262
|
4.6
|
41.0
|
1.0
|
|
CB
|
B:ASP223
|
4.7
|
41.8
|
1.0
|
|
C
|
B:TYR260
|
4.7
|
42.0
|
1.0
|
|
CB
|
B:SER259
|
5.0
|
40.3
|
1.0
|
|
Calcium binding site 4 out
of 14 in 6klo
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Calcium Binding Sites List in 6klo
Calcium binding site 4 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1002
b:40.7
occ:1.00
|
OD1
|
B:ASP221
|
2.3
|
41.8
|
1.0
|
|
O
|
B:ILE225
|
2.3
|
40.4
|
1.0
|
|
OE2
|
B:GLU230
|
2.4
|
40.9
|
1.0
|
|
OD1
|
B:ASP219
|
2.5
|
44.7
|
1.0
|
|
OD1
|
B:ASP223
|
3.0
|
41.8
|
1.0
|
|
CG
|
B:ASP221
|
3.1
|
41.8
|
1.0
|
|
OD2
|
B:ASP221
|
3.3
|
41.8
|
1.0
|
|
OD1
|
B:ASP227
|
3.4
|
44.1
|
1.0
|
|
CD
|
B:GLU230
|
3.5
|
40.9
|
1.0
|
|
C
|
B:ILE225
|
3.5
|
40.4
|
1.0
|
|
CG
|
B:ASP219
|
3.7
|
44.7
|
1.0
|
|
CG
|
B:GLU230
|
3.9
|
40.9
|
1.0
|
|
C
|
B:PRO226
|
3.9
|
43.6
|
1.0
|
|
CG
|
B:ASP223
|
4.0
|
41.8
|
1.0
|
|
O
|
B:PRO226
|
4.0
|
43.6
|
1.0
|
|
O
|
B:TYR260
|
4.1
|
42.0
|
1.0
|
|
N
|
B:ASP227
|
4.2
|
44.1
|
1.0
|
|
OD2
|
B:ASP223
|
4.2
|
41.8
|
1.0
|
|
CA
|
B:TYR260
|
4.3
|
42.0
|
1.0
|
|
CA
|
B:ASP219
|
4.3
|
44.7
|
1.0
|
|
N
|
B:ASP221
|
4.4
|
41.8
|
1.0
|
|
CA
|
B:PRO226
|
4.4
|
43.6
|
1.0
|
|
N
|
B:PRO226
|
4.4
|
43.6
|
1.0
|
|
N
|
B:THR220
|
4.4
|
42.3
|
1.0
|
|
CA
|
B:ILE225
|
4.4
|
40.4
|
1.0
|
|
OD2
|
B:ASP219
|
4.5
|
44.7
|
1.0
|
|
CB
|
B:ASP221
|
4.5
|
41.8
|
1.0
|
|
CB
|
B:TYR260
|
4.5
|
42.0
|
1.0
|
|
CA
|
B:CA1001
|
4.5
|
38.3
|
1.0
|
|
CA
|
B:ASP227
|
4.5
|
44.1
|
1.0
|
|
N
|
B:ILE225
|
4.5
|
40.4
|
1.0
|
|
OE1
|
B:GLU230
|
4.5
|
40.9
|
1.0
|
|
CG
|
B:ASP227
|
4.5
|
44.1
|
1.0
|
|
CB
|
B:ILE225
|
4.6
|
40.4
|
1.0
|
|
CB
|
B:ASP219
|
4.6
|
44.7
|
1.0
|
|
C
|
B:TYR260
|
4.6
|
42.0
|
1.0
|
|
C
|
B:ASP219
|
4.6
|
44.7
|
1.0
|
|
N
|
B:ASN222
|
4.8
|
44.3
|
1.0
|
|
N
|
B:ASP223
|
4.9
|
41.8
|
1.0
|
|
CA
|
B:ASP221
|
4.9
|
41.8
|
1.0
|
|
CB
|
B:GLU230
|
5.0
|
40.9
|
1.0
|
|
Calcium binding site 5 out
of 14 in 6klo
Go back to
Calcium Binding Sites List in 6klo
Calcium binding site 5 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1001
b:39.1
occ:1.00
|
OD2
|
C:ASP221
|
2.3
|
41.6
|
1.0
|
|
OD2
|
C:ASP272
|
2.4
|
36.8
|
1.0
|
|
O
|
C:GLU262
|
2.4
|
41.4
|
1.0
|
|
OE1
|
C:GLU230
|
2.4
|
40.1
|
1.0
|
|
O
|
C:SER259
|
2.4
|
40.2
|
1.0
|
|
OE2
|
C:GLU230
|
2.8
|
40.1
|
1.0
|
|
OD2
|
C:ASP223
|
2.8
|
42.0
|
1.0
|
|
CD
|
C:GLU230
|
2.9
|
40.1
|
1.0
|
|
CG
|
C:ASP272
|
3.5
|
36.8
|
1.0
|
|
C
|
C:GLU262
|
3.5
|
41.4
|
1.0
|
|
CG
|
C:ASP221
|
3.6
|
41.6
|
1.0
|
|
C
|
C:SER259
|
3.6
|
40.2
|
1.0
|
|
CG
|
C:ASP223
|
3.7
|
42.0
|
1.0
|
|
OG
|
C:SER258
|
3.9
|
38.8
|
1.0
|
|
OD1
|
C:ASP223
|
4.0
|
42.0
|
1.0
|
|
CB
|
C:ASP272
|
4.0
|
36.8
|
1.0
|
|
CA
|
C:SER263
|
4.1
|
38.6
|
1.0
|
|
OG1
|
C:THR265
|
4.2
|
35.9
|
1.0
|
|
N
|
C:SER263
|
4.2
|
38.6
|
1.0
|
|
OD1
|
C:ASP221
|
4.3
|
41.6
|
1.0
|
|
CA
|
C:TYR260
|
4.3
|
41.7
|
1.0
|
|
CA
|
C:CA1002
|
4.3
|
38.8
|
1.0
|
|
N
|
C:TYR260
|
4.4
|
41.7
|
1.0
|
|
CG
|
C:GLU230
|
4.4
|
40.1
|
1.0
|
|
OD1
|
C:ASP272
|
4.5
|
36.8
|
1.0
|
|
N
|
C:GLU262
|
4.5
|
41.4
|
1.0
|
|
C
|
C:SER263
|
4.6
|
38.6
|
1.0
|
|
N
|
C:SER259
|
4.6
|
40.2
|
1.0
|
|
CB
|
C:ASP221
|
4.6
|
41.6
|
1.0
|
|
CB
|
C:SER258
|
4.6
|
38.8
|
1.0
|
|
CA
|
C:GLU262
|
4.6
|
41.4
|
1.0
|
|
CA
|
C:SER259
|
4.7
|
40.2
|
1.0
|
|
C
|
C:TYR260
|
4.7
|
41.7
|
1.0
|
|
O
|
C:SER263
|
4.7
|
38.6
|
1.0
|
|
CB
|
C:ASP223
|
4.8
|
42.0
|
1.0
|
|
Calcium binding site 6 out
of 14 in 6klo
Go back to
Calcium Binding Sites List in 6klo
Calcium binding site 6 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1002
b:38.8
occ:1.00
|
OD1
|
C:ASP221
|
2.2
|
41.6
|
1.0
|
|
O
|
C:ILE225
|
2.3
|
40.9
|
1.0
|
|
OE2
|
C:GLU230
|
2.3
|
40.1
|
1.0
|
|
OD1
|
C:ASP219
|
2.3
|
45.1
|
1.0
|
|
OD1
|
C:ASP223
|
2.4
|
42.0
|
1.0
|
|
CG
|
C:ASP221
|
3.1
|
41.6
|
1.0
|
|
OD2
|
C:ASP221
|
3.3
|
41.6
|
1.0
|
|
C
|
C:ILE225
|
3.5
|
40.9
|
1.0
|
|
CD
|
C:GLU230
|
3.5
|
40.1
|
1.0
|
|
CG
|
C:ASP223
|
3.5
|
42.0
|
1.0
|
|
CG
|
C:ASP219
|
3.6
|
45.1
|
1.0
|
|
OD2
|
C:ASP223
|
4.0
|
42.0
|
1.0
|
|
OD1
|
C:ASP227
|
4.0
|
42.7
|
1.0
|
|
CG
|
C:GLU230
|
4.1
|
40.1
|
1.0
|
|
N
|
C:ILE225
|
4.2
|
40.9
|
1.0
|
|
CA
|
C:ILE225
|
4.2
|
40.9
|
1.0
|
|
C
|
C:PRO226
|
4.3
|
42.4
|
1.0
|
|
CB
|
C:ILE225
|
4.3
|
40.9
|
1.0
|
|
OD2
|
C:ASP219
|
4.3
|
45.1
|
1.0
|
|
O
|
C:PRO226
|
4.3
|
42.4
|
1.0
|
|
CA
|
C:CA1001
|
4.3
|
39.1
|
1.0
|
|
CA
|
C:ASP219
|
4.4
|
45.1
|
1.0
|
|
N
|
C:ASP221
|
4.4
|
41.6
|
1.0
|
|
O
|
C:TYR260
|
4.4
|
41.7
|
1.0
|
|
N
|
C:PRO226
|
4.5
|
42.4
|
1.0
|
|
OE1
|
C:GLU230
|
4.5
|
40.1
|
1.0
|
|
N
|
C:ASP223
|
4.5
|
42.0
|
1.0
|
|
CB
|
C:ASP221
|
4.5
|
41.6
|
1.0
|
|
CB
|
C:ASP219
|
4.6
|
45.1
|
1.0
|
|
CA
|
C:PRO226
|
4.6
|
42.4
|
1.0
|
|
N
|
C:THR220
|
4.6
|
42.2
|
1.0
|
|
N
|
C:ASP227
|
4.7
|
42.7
|
1.0
|
|
CA
|
C:TYR260
|
4.7
|
41.7
|
1.0
|
|
N
|
C:ASN222
|
4.7
|
42.8
|
1.0
|
|
C
|
C:ASP219
|
4.8
|
45.1
|
1.0
|
|
CB
|
C:ASP223
|
4.8
|
42.0
|
1.0
|
|
CA
|
C:ASP221
|
4.9
|
41.6
|
1.0
|
|
CB
|
C:TYR260
|
4.9
|
41.7
|
1.0
|
|
C
|
C:TYR260
|
5.0
|
41.7
|
1.0
|
|
Calcium binding site 7 out
of 14 in 6klo
Go back to
Calcium Binding Sites List in 6klo
Calcium binding site 7 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1001
b:35.0
occ:1.00
|
OD2
|
D:ASP221
|
2.3
|
39.8
|
1.0
|
|
OD2
|
D:ASP272
|
2.4
|
34.3
|
1.0
|
|
OE1
|
D:GLU230
|
2.4
|
38.3
|
1.0
|
|
O
|
D:GLU262
|
2.4
|
39.1
|
1.0
|
|
O
|
D:SER259
|
2.4
|
38.6
|
1.0
|
|
OD2
|
D:ASP223
|
2.5
|
38.6
|
1.0
|
|
OE2
|
D:GLU230
|
2.8
|
38.3
|
1.0
|
|
CD
|
D:GLU230
|
2.9
|
38.3
|
1.0
|
|
CG
|
D:ASP272
|
3.5
|
34.3
|
1.0
|
|
CG
|
D:ASP223
|
3.5
|
38.6
|
1.0
|
|
CG
|
D:ASP221
|
3.5
|
39.8
|
1.0
|
|
C
|
D:GLU262
|
3.5
|
39.1
|
1.0
|
|
C
|
D:SER259
|
3.6
|
38.6
|
1.0
|
|
OD1
|
D:ASP223
|
4.0
|
38.6
|
1.0
|
|
CB
|
D:ASP272
|
4.1
|
34.3
|
1.0
|
|
OD1
|
D:ASP221
|
4.1
|
39.8
|
1.0
|
|
CA
|
D:SER263
|
4.2
|
36.5
|
1.0
|
|
OG1
|
D:THR265
|
4.3
|
34.1
|
1.0
|
|
N
|
D:SER263
|
4.3
|
36.5
|
1.0
|
|
CA
|
D:TYR260
|
4.3
|
40.1
|
1.0
|
|
CA
|
D:CA1002
|
4.4
|
35.7
|
1.0
|
|
N
|
D:GLU262
|
4.4
|
39.1
|
1.0
|
|
N
|
D:TYR260
|
4.4
|
40.1
|
1.0
|
|
CG
|
D:GLU230
|
4.4
|
38.3
|
1.0
|
|
N
|
D:SER259
|
4.4
|
38.6
|
1.0
|
|
OD1
|
D:ASP272
|
4.5
|
34.3
|
1.0
|
|
O
|
D:SER263
|
4.5
|
36.5
|
1.0
|
|
CB
|
D:SER258
|
4.5
|
37.5
|
1.0
|
|
CA
|
D:GLU262
|
4.6
|
39.1
|
1.0
|
|
CA
|
D:SER259
|
4.6
|
38.6
|
1.0
|
|
C
|
D:SER263
|
4.6
|
36.5
|
1.0
|
|
CB
|
D:ASP221
|
4.6
|
39.8
|
1.0
|
|
C
|
D:TYR260
|
4.7
|
40.1
|
1.0
|
|
CB
|
D:ASP223
|
4.7
|
38.6
|
1.0
|
|
N
|
D:LEU261
|
4.9
|
40.3
|
1.0
|
|
Calcium binding site 8 out
of 14 in 6klo
Go back to
Calcium Binding Sites List in 6klo
Calcium binding site 8 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1002
b:35.7
occ:1.00
|
OD1
|
D:ASP221
|
2.3
|
39.8
|
1.0
|
|
OE2
|
D:GLU230
|
2.3
|
38.3
|
1.0
|
|
OD1
|
D:ASP219
|
2.3
|
43.2
|
1.0
|
|
O
|
D:ILE225
|
2.3
|
37.3
|
1.0
|
|
OD1
|
D:ASP223
|
2.3
|
38.6
|
1.0
|
|
CG
|
D:ASP221
|
3.2
|
39.8
|
1.0
|
|
CG
|
D:ASP223
|
3.4
|
38.6
|
1.0
|
|
CD
|
D:GLU230
|
3.5
|
38.3
|
1.0
|
|
OD2
|
D:ASP221
|
3.5
|
39.8
|
1.0
|
|
CG
|
D:ASP219
|
3.5
|
43.2
|
1.0
|
|
C
|
D:ILE225
|
3.5
|
37.3
|
1.0
|
|
OD2
|
D:ASP223
|
3.8
|
38.6
|
1.0
|
|
OD1
|
D:ASP227
|
4.0
|
41.1
|
1.0
|
|
CG
|
D:GLU230
|
4.1
|
38.3
|
1.0
|
|
N
|
D:ILE225
|
4.2
|
37.3
|
1.0
|
|
OD2
|
D:ASP219
|
4.2
|
43.2
|
1.0
|
|
CA
|
D:ILE225
|
4.2
|
37.3
|
1.0
|
|
N
|
D:ASP223
|
4.3
|
38.6
|
1.0
|
|
CB
|
D:ILE225
|
4.3
|
37.3
|
1.0
|
|
O
|
D:PRO226
|
4.3
|
39.2
|
1.0
|
|
CA
|
D:CA1001
|
4.4
|
35.0
|
1.0
|
|
CA
|
D:ASP219
|
4.4
|
43.2
|
1.0
|
|
C
|
D:PRO226
|
4.4
|
39.2
|
1.0
|
|
N
|
D:ASP221
|
4.4
|
39.8
|
1.0
|
|
OE1
|
D:GLU230
|
4.4
|
38.3
|
1.0
|
|
CB
|
D:ASP219
|
4.5
|
43.2
|
1.0
|
|
O
|
D:TYR260
|
4.5
|
40.1
|
1.0
|
|
N
|
D:THR220
|
4.5
|
41.3
|
1.0
|
|
N
|
D:PRO226
|
4.5
|
39.2
|
1.0
|
|
N
|
D:ASN222
|
4.5
|
42.3
|
1.0
|
|
CB
|
D:ASP221
|
4.6
|
39.8
|
1.0
|
|
C
|
D:ASP219
|
4.6
|
43.2
|
1.0
|
|
CB
|
D:ASP223
|
4.7
|
38.6
|
1.0
|
|
CA
|
D:PRO226
|
4.7
|
39.2
|
1.0
|
|
N
|
D:ASP227
|
4.7
|
41.1
|
1.0
|
|
CA
|
D:TYR260
|
4.8
|
40.1
|
1.0
|
|
CA
|
D:ASP223
|
4.9
|
38.6
|
1.0
|
|
CA
|
D:ASP221
|
4.9
|
39.8
|
1.0
|
|
C
|
D:ASP223
|
4.9
|
38.6
|
1.0
|
|
C
|
D:ASP221
|
5.0
|
39.8
|
1.0
|
|
C
|
D:TYR260
|
5.0
|
40.1
|
1.0
|
|
Calcium binding site 9 out
of 14 in 6klo
Go back to
Calcium Binding Sites List in 6klo
Calcium binding site 9 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1001
b:34.9
occ:1.00
|
O
|
E:GLU262
|
2.4
|
40.4
|
1.0
|
|
OE1
|
E:GLU230
|
2.4
|
39.8
|
1.0
|
|
OD2
|
E:ASP221
|
2.4
|
41.6
|
1.0
|
|
O
|
E:SER259
|
2.4
|
38.9
|
1.0
|
|
OE2
|
E:GLU230
|
2.4
|
39.8
|
1.0
|
|
OD2
|
E:ASP272
|
2.5
|
35.2
|
1.0
|
|
OD2
|
E:ASP223
|
2.7
|
42.1
|
1.0
|
|
CD
|
E:GLU230
|
2.8
|
39.8
|
1.0
|
|
C
|
E:GLU262
|
3.6
|
40.4
|
1.0
|
|
CG
|
E:ASP272
|
3.6
|
35.2
|
1.0
|
|
C
|
E:SER259
|
3.6
|
38.9
|
1.0
|
|
CG
|
E:ASP221
|
3.6
|
41.6
|
1.0
|
|
CG
|
E:ASP223
|
3.6
|
42.1
|
1.0
|
|
OD1
|
E:ASP223
|
3.9
|
42.1
|
1.0
|
|
CB
|
E:ASP272
|
4.1
|
35.2
|
1.0
|
|
CA
|
E:SER263
|
4.1
|
37.7
|
1.0
|
|
CA
|
E:CA1002
|
4.1
|
35.6
|
1.0
|
|
OG
|
E:SER258
|
4.2
|
38.1
|
1.0
|
|
CA
|
E:TYR260
|
4.2
|
40.9
|
1.0
|
|
OD1
|
E:ASP221
|
4.2
|
41.6
|
1.0
|
|
OG1
|
E:THR265
|
4.3
|
34.1
|
1.0
|
|
CG
|
E:GLU230
|
4.3
|
39.8
|
1.0
|
|
N
|
E:SER263
|
4.3
|
37.7
|
1.0
|
|
N
|
E:TYR260
|
4.4
|
40.9
|
1.0
|
|
N
|
E:SER259
|
4.5
|
38.9
|
1.0
|
|
N
|
E:GLU262
|
4.5
|
40.4
|
1.0
|
|
C
|
E:TYR260
|
4.6
|
40.9
|
1.0
|
|
OG
|
E:SER259
|
4.6
|
38.9
|
1.0
|
|
OD1
|
E:ASP272
|
4.6
|
35.2
|
1.0
|
|
CB
|
E:SER258
|
4.6
|
38.1
|
1.0
|
|
CA
|
E:SER259
|
4.6
|
38.9
|
1.0
|
|
C
|
E:SER263
|
4.6
|
37.7
|
1.0
|
|
CA
|
E:GLU262
|
4.6
|
40.4
|
1.0
|
|
CB
|
E:ASP221
|
4.7
|
41.6
|
1.0
|
|
O
|
E:SER263
|
4.7
|
37.7
|
1.0
|
|
CB
|
E:ASP223
|
4.8
|
42.1
|
1.0
|
|
N
|
E:LEU261
|
4.9
|
40.0
|
1.0
|
|
Calcium binding site 10 out
of 14 in 6klo
Go back to
Calcium Binding Sites List in 6klo
Calcium binding site 10 out
of 14 in the Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Complex Structure of Iota Toxin Enzymatic Component (Ia) and Binding Component (Ib) Pore with Short Stem within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1002
b:35.6
occ:1.00
|
O
|
E:ILE225
|
2.2
|
40.5
|
1.0
|
|
OD1
|
E:ASP221
|
2.3
|
41.6
|
1.0
|
|
OE2
|
E:GLU230
|
2.4
|
39.8
|
1.0
|
|
OD1
|
E:ASP223
|
2.4
|
42.1
|
1.0
|
|
OD1
|
E:ASP219
|
2.4
|
45.0
|
1.0
|
|
CG
|
E:ASP221
|
3.1
|
41.6
|
1.0
|
|
OD2
|
E:ASP221
|
3.3
|
41.6
|
1.0
|
|
C
|
E:ILE225
|
3.4
|
40.5
|
1.0
|
|
CD
|
E:GLU230
|
3.4
|
39.8
|
1.0
|
|
CG
|
E:ASP223
|
3.5
|
42.1
|
1.0
|
|
CG
|
E:ASP219
|
3.6
|
45.0
|
1.0
|
|
OD2
|
E:ASP223
|
3.9
|
42.1
|
1.0
|
|
CG
|
E:GLU230
|
3.9
|
39.8
|
1.0
|
|
CA
|
E:CA1001
|
4.1
|
34.9
|
1.0
|
|
CA
|
E:ILE225
|
4.2
|
40.5
|
1.0
|
|
N
|
E:ILE225
|
4.2
|
40.5
|
1.0
|
|
CB
|
E:ILE225
|
4.2
|
40.5
|
1.0
|
|
OD1
|
E:ASP227
|
4.3
|
43.5
|
1.0
|
|
O
|
E:PRO226
|
4.3
|
42.9
|
1.0
|
|
OD2
|
E:ASP219
|
4.3
|
45.0
|
1.0
|
|
C
|
E:PRO226
|
4.3
|
42.9
|
1.0
|
|
O
|
E:TYR260
|
4.4
|
40.9
|
1.0
|
|
N
|
E:PRO226
|
4.4
|
42.9
|
1.0
|
|
N
|
E:ASP221
|
4.5
|
41.6
|
1.0
|
|
OE1
|
E:GLU230
|
4.5
|
39.8
|
1.0
|
|
N
|
E:ASP223
|
4.5
|
42.1
|
1.0
|
|
CB
|
E:ASP221
|
4.5
|
41.6
|
1.0
|
|
CA
|
E:PRO226
|
4.6
|
42.9
|
1.0
|
|
N
|
E:THR220
|
4.6
|
42.9
|
1.0
|
|
CA
|
E:TYR260
|
4.6
|
40.9
|
1.0
|
|
CA
|
E:ASP219
|
4.6
|
45.0
|
1.0
|
|
CB
|
E:ASP219
|
4.7
|
45.0
|
1.0
|
|
CB
|
E:ASP223
|
4.7
|
42.1
|
1.0
|
|
N
|
E:ASP227
|
4.8
|
43.5
|
1.0
|
|
N
|
E:ASN222
|
4.8
|
47.2
|
1.0
|
|
C
|
E:TYR260
|
4.9
|
40.9
|
1.0
|
|
C
|
E:ASP219
|
4.9
|
45.0
|
1.0
|
|
C
|
E:ASP223
|
4.9
|
42.1
|
1.0
|
|
CA
|
E:ASP221
|
4.9
|
41.6
|
1.0
|
|
CB
|
E:TYR260
|
4.9
|
40.9
|
1.0
|
|
CA
|
E:ASP223
|
4.9
|
42.1
|
1.0
|
|
Reference:
T.Yamada,
T.Yoshida,
A.Kawamoto,
K.Mitsuoka,
K.Iwasaki,
H.Tsuge.
Translocational Unfolding in Clostridial Binary Iota Toxin Complex To Be Published.
Page generated: Wed Jul 9 15:35:25 2025
|
