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Calcium in PDB 6mm2: Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium

Protein crystallography data

The structure of Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium, PDB code: 6mm2 was solved by J.A.Kaczmarski, C.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.04 / 1.04
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 52.058, 52.058, 95.214, 90.00, 90.00, 120.00
R / Rfree (%) 14.5 / 16.3

Other elements in 6mm2:

The structure of Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium (pdb code 6mm2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium, PDB code: 6mm2:

Calcium binding site 1 out of 1 in 6mm2

Go back to Calcium Binding Sites List in 6mm2
Calcium binding site 1 out of 1 in the Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Carbon Regulatory Pii-Like Protein Sbtb From Cyanobium Sp. 7001 Bound to Atp and Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:20.4
occ:1.00
O2B A:ATP201 2.3 18.6 1.0
O A:GLY41 2.4 19.1 1.0
OD1 A:ASN44 2.4 25.1 1.0
O1G A:ATP201 2.4 17.4 1.0
OE2 A:GLU50 2.5 19.9 1.0
O A:HOH349 2.5 26.1 1.0
OE1 A:GLU50 2.6 27.5 1.0
CD A:GLU50 2.9 25.0 1.0
H A:GLY41 3.2 19.5 1.0
HA A:ASN44 3.4 26.3 1.0
C A:GLY41 3.4 17.7 1.0
PG A:ATP201 3.5 16.1 1.0
H A:ASN44 3.5 25.3 1.0
CG A:ASN44 3.6 26.0 1.0
PB A:ATP201 3.6 18.1 1.0
HA A:SER42 3.9 24.4 1.0
O2G A:ATP201 3.9 16.9 1.0
O3B A:ATP201 3.9 16.9 1.0
N A:GLY41 4.0 16.2 1.0
CA A:ASN44 4.1 21.9 1.0
N A:ASN44 4.1 21.1 1.0
HE2 A:TYR57 4.1 26.9 1.0
CA A:GLY41 4.2 17.2 1.0
N A:SER42 4.2 19.1 1.0
CB A:ASN44 4.4 24.4 1.0
CG A:GLU50 4.4 24.7 1.0
CA A:SER42 4.4 20.3 1.0
O1B A:ATP201 4.5 18.7 1.0
HA3 A:GLY41 4.5 20.6 1.0
HD21 A:ASN44 4.5 34.8 1.0
ND2 A:ASN44 4.5 29.0 1.0
O3A A:ATP201 4.6 19.2 1.0
HB3 A:ASN44 4.7 29.4 1.0
HB3 A:GLU40 4.7 21.2 1.0
HG A:SER54 4.7 44.0 1.0
C A:SER42 4.7 20.9 1.0
HG2 A:GLU50 4.8 29.7 1.0
H A:ARG43 4.8 25.3 1.0
HG3 A:GLU50 4.8 29.7 1.0
CE2 A:TYR57 4.9 22.4 1.0
O3G A:ATP201 4.9 16.1 1.0
HA A:GLU40 4.9 18.4 1.0
N A:ARG43 4.9 21.1 1.0
HH A:TYR57 4.9 32.1 1.0
H A:SER42 5.0 22.9 1.0

Reference:

C.Jackson, J.A.Kaczmarski, D.Price. Structure and Function of Sbtb From Cyanobium Sp. 7001 Biorxiv 2019.
Page generated: Tue Jul 16 11:24:19 2024

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