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Calcium in PDB 6n00: Fluoroacetate Dehalogenase, Room Temperature Structure, Using Last 1 Degree of Total 3 Degree Oscillation and 144 Kgy Dose

Enzymatic activity of Fluoroacetate Dehalogenase, Room Temperature Structure, Using Last 1 Degree of Total 3 Degree Oscillation and 144 Kgy Dose

All present enzymatic activity of Fluoroacetate Dehalogenase, Room Temperature Structure, Using Last 1 Degree of Total 3 Degree Oscillation and 144 Kgy Dose:
3.8.1.3;

Protein crystallography data

The structure of Fluoroacetate Dehalogenase, Room Temperature Structure, Using Last 1 Degree of Total 3 Degree Oscillation and 144 Kgy Dose, PDB code: 6n00 was solved by A.D.Finke, J.L.Wierman, O.Pare-Labrosse, A.Sarrachini, J.Besaw, P.Mehrabi, S.M.Gruner, R.J.D.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.43 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.600, 79.100, 83.800, 90.00, 103.00, 90.00
R / Rfree (%) 17.8 / 22.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Fluoroacetate Dehalogenase, Room Temperature Structure, Using Last 1 Degree of Total 3 Degree Oscillation and 144 Kgy Dose (pdb code 6n00). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Fluoroacetate Dehalogenase, Room Temperature Structure, Using Last 1 Degree of Total 3 Degree Oscillation and 144 Kgy Dose, PDB code: 6n00:

Calcium binding site 1 out of 1 in 6n00

Go back to Calcium Binding Sites List in 6n00
Calcium binding site 1 out of 1 in the Fluoroacetate Dehalogenase, Room Temperature Structure, Using Last 1 Degree of Total 3 Degree Oscillation and 144 Kgy Dose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Fluoroacetate Dehalogenase, Room Temperature Structure, Using Last 1 Degree of Total 3 Degree Oscillation and 144 Kgy Dose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:55.6
occ:1.00
 OD2 B:ASP173 2.4 39.2 1.0
O A:HOH423 2.7 43.2 1.0
O A:HOH401 2.9 54.1 1.0
CG B:ASP173 3.2 41.1 1.0
OD1 B:ASP173 3.9 39.3 1.0
CB B:ASP173 3.9 38.5 1.0
OD1 A:ASN168 4.1 35.4 1.0
CG A:ASN168 4.2 33.9 1.0
CB A:ASN168 4.5 27.5 1.0
O A:HOH512 4.5 39.7 1.0
ND2 A:ASN168 4.8 32.1 1.0
O A:ASN168 4.8 34.0 1.0
CA A:ASN168 4.9 33.0 1.0
O B:GLY172 4.9 47.9 1.0

Reference:

J.L.Wierman, O.Pare-Labrosse, A.Sarracini, J.E.Besaw, M.J.Cook, S.Oghbaey, H.Daoud, P.Mehrabi, I.Kriksunov, A.Kuo, D.J.Schuller, S.Smith, O.P.Ernst, D.M.E.Szebenyi, S.M.Gruner, R.J.D.Miller, A.D.Finke. Fixed-Target Serial Oscillation Crystallography at Room Temperature. Iucrj V. 6 305 2019.
ISSN: ESSN 2052-2525
PubMed: 30867928
DOI: 10.1107/S2052252519001453
Page generated: Tue Jul 16 11:30:30 2024

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