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Calcium in PDB 6nro: Human Parainfluenza Virus Type 3 Fusion Protein N-Terminal Heptad Repeat Domain+Viqki

Protein crystallography data

The structure of Human Parainfluenza Virus Type 3 Fusion Protein N-Terminal Heptad Repeat Domain+Viqki, PDB code: 6nro was solved by V.K.Outlaw, D.F.Kreitler, S.H.Gellman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.29 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.970, 52.250, 54.110, 90.00, 100.56, 90.00
R / Rfree (%) 21.7 / 24.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Human Parainfluenza Virus Type 3 Fusion Protein N-Terminal Heptad Repeat Domain+Viqki (pdb code 6nro). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Human Parainfluenza Virus Type 3 Fusion Protein N-Terminal Heptad Repeat Domain+Viqki, PDB code: 6nro:

Calcium binding site 1 out of 1 in 6nro

Go back to Calcium Binding Sites List in 6nro
Calcium binding site 1 out of 1 in the Human Parainfluenza Virus Type 3 Fusion Protein N-Terminal Heptad Repeat Domain+Viqki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Parainfluenza Virus Type 3 Fusion Protein N-Terminal Heptad Repeat Domain+Viqki within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:51.5
occ:1.00
HE A:ARG152 2.3 53.0 1.0
HH21 A:ARG152 2.8 60.6 1.0
NE A:ARG152 3.2 44.4 1.0
HG2 A:LYS148 3.2 64.7 1.0
HE2 A:LYS148 3.5 88.8 1.0
NH2 A:ARG152 3.6 48.3 1.0
HG2 A:ARG152 3.6 57.0 1.0
HB2 A:ARG152 3.7 48.3 1.0
HA A:GLU149 3.7 57.6 1.0
HE3 A:LYS148 3.7 88.8 1.0
CZ A:ARG152 3.8 46.0 1.0
HG3 A:LYS148 4.0 64.7 1.0
CG A:LYS148 4.0 48.4 1.0
CE A:LYS148 4.0 60.1 1.0
CG A:ARG152 4.1 45.8 1.0
HB3 A:ARG152 4.2 48.3 1.0
CD A:ARG152 4.2 45.2 1.0
CB A:ARG152 4.2 41.6 1.0
HG3 A:GLU149 4.2 99.9 1.0
HH22 A:ARG152 4.3 60.6 1.0
CA A:GLU149 4.5 44.8 1.0
CD A:LYS148 4.6 55.7 1.0
O A:LYS148 4.6 38.4 1.0
HB2 A:GLU149 4.7 89.3 1.0
HD2 A:ARG152 4.8 55.5 1.0
N A:GLU149 4.8 39.8 1.0
C A:LYS148 4.8 40.0 1.0
HD3 A:ARG152 4.8 55.5 1.0

Reference:

V.K.Outlaw, S.Bottom-Tanzer, D.F.Kreitler, S.H.Gellman, M.Porotto, A.Moscona. Dual Inhibition of Human Parainfluenza Type 3 and Respiratory Syncytial Virus Infectivity with A Single Agent. J.Am.Chem.Soc. V. 141 12648 2019.
ISSN: ESSN 1520-5126
PubMed: 31268705
DOI: 10.1021/JACS.9B04615
Page generated: Tue Jul 16 11:44:54 2024

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