Calcium in PDB 6ohh: Structure of EF1P2_MFAP2B Bound to Dfhbi

The structure of Structure of EF1P2_MFAP2B Bound to Dfhbi, PDB code: 6ohh was solved by L.A.Doyle, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.42 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	36.350, 35.564, 86.596, 90.00, 90.68, 90.00
R / Rfree (%)	16.9 / 20.1

The structure of Structure of EF1P2_MFAP2B Bound to Dfhbi also contains other interesting chemical elements:

Fluorine

(F)

4 atoms

The binding sites of Calcium atom in the Structure of EF1P2_MFAP2B Bound to Dfhbi (pdb code 6ohh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of EF1P2_MFAP2B Bound to Dfhbi, PDB code: 6ohh:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of EF1P2_MFAP2B Bound to Dfhbi


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of EF1P2_MFAP2B Bound to Dfhbi within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:20.3 occ:1.00 OD1 A:ASP104 2.3 21.2 1.0 OD1 A:ASP106 2.3 19.8 1.0 O A:TYR110 2.3 24.5 1.0 OD1 A:ASP108 2.4 26.2 1.0 O A:HOH312 2.4 18.6 1.0 OE1 A:GLU115 2.4 19.2 1.0 OE2 A:GLU115 2.6 18.5 1.0 CD A:GLU115 2.8 16.1 1.0 CG A:ASP106 3.1 24.2 1.0 CG A:ASP108 3.2 23.1 1.0 OD2 A:ASP106 3.2 27.4 1.0 CG A:ASP104 3.5 24.0 1.0 C A:TYR110 3.5 24.3 1.0 OD2 A:ASP108 3.5 26.6 1.0 N A:TYR110 4.1 30.6 1.0 N A:ASP108 4.2 26.5 1.0 CA A:ASP104 4.3 17.1 1.0 OD2 A:ASP104 4.3 27.1 1.0 CB A:ASP108 4.3 29.2 1.0 CB A:ASP104 4.4 22.1 1.0 CG A:GLU115 4.4 17.2 1.0 CA A:TYR110 4.4 32.9 1.0 CB A:ASP106 4.4 21.3 1.0 N A:SER112 4.4 16.9 1.0 N A:ILE111 4.5 26.4 1.0 N A:ASP106 4.5 18.8 1.0 CA A:ILE111 4.5 24.2 1.0 N A:GLY107 4.5 23.4 1.0 C A:ASP104 4.6 20.1 1.0 CA A:ASP108 4.7 25.7 1.0 N A:GLY109 4.7 25.2 1.0 OG A:SER112 4.8 22.7 1.0 CA A:ASP106 4.8 21.5 1.0 C A:ASP106 4.8 23.2 1.0 N A:LYS105 4.9 15.8 1.0 C A:ASP108 4.9 28.3 1.0 CB A:TYR110 4.9 30.8 1.0 C A:ILE111 5.0 20.9 1.0 CB A:SER112 5.0 18.0 1.0

Calcium binding site 2 out of 2 in the Structure of EF1P2_MFAP2B Bound to Dfhbi


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of EF1P2_MFAP2B Bound to Dfhbi within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:22.2 occ:1.00 OD1 B:ASP104 2.3 20.1 1.0 O B:TYR110 2.3 24.8 1.0 OD1 B:ASP106 2.3 18.9 1.0 OD1 B:ASP108 2.4 28.8 1.0 O B:HOH353 2.4 20.9 1.0 OE1 B:GLU115 2.5 19.5 1.0 OE2 B:GLU115 2.7 20.4 1.0 CD B:GLU115 2.9 22.3 1.0 CG B:ASP106 3.1 21.3 1.0 CG B:ASP108 3.2 23.1 1.0 OD2 B:ASP106 3.3 25.2 1.0 CG B:ASP104 3.4 21.9 1.0 C B:TYR110 3.5 25.4 1.0 OD2 B:ASP108 3.5 24.9 1.0 N B:TYR110 4.2 28.1 1.0 OD2 B:ASP104 4.2 26.6 1.0 N B:ASP108 4.3 25.8 1.0 CA B:ASP104 4.3 20.5 1.0 CA B:TYR110 4.3 24.4 1.0 CB B:ASP104 4.4 22.5 1.0 CB B:ASP108 4.4 25.4 1.0 CG B:GLU115 4.5 21.4 1.0 N B:ILE111 4.5 24.3 1.0 CB B:ASP106 4.5 22.7 1.0 N B:ASP106 4.5 23.6 1.0 N B:SER112 4.6 24.1 1.0 CA B:ILE111 4.6 25.2 1.0 C B:ASP104 4.6 22.1 1.0 N B:GLY107 4.6 26.8 1.0 CB B:TYR110 4.7 25.8 1.0 CA B:ASP108 4.8 24.8 1.0 N B:GLY109 4.8 27.2 1.0 CA B:ASP106 4.9 23.2 1.0 N B:LYS105 4.9 19.4 1.0 C B:ASP106 4.9 25.5 1.0

L.A.Doyle, L.A.Doyle, B.L.Stoddard. N/A N/A.