Calcium in PDB 6opm: Casposase Bound to Integration Product

The structure of Casposase Bound to Integration Product, PDB code: 6opm was solved by F.Dyda, A.B.Hickman, S.Kailasan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.89 / 3.10
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	106.390, 106.390, 423.360, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 25.6

The binding sites of Calcium atom in the Casposase Bound to Integration Product (pdb code 6opm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Casposase Bound to Integration Product, PDB code: 6opm:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Casposase Bound to Integration Product


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Casposase Bound to Integration Product within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:0.1 occ:1.00 OD2 A:ASP46 3.0 0.4 1.0 CA A:MSE1 3.7 0.5 1.0 O A:ASP44 3.8 0.4 1.0 CG A:ASP46 4.0 0.1 1.0 OE1 D:GLN189 4.0 0.3 1.0 CB A:MSE1 4.1 0.7 1.0 CB A:ASP46 4.2 0.8 1.0 N A:MSE1 4.2 0.8 1.0 CG A:MSE1 4.3 0.3 1.0 N A:LYS2 4.5 0.1 1.0 OP2 F:DC21 4.6 0.7 1.0 N A:ASP46 4.7 0.9 1.0 CA A:ASP46 4.7 0.7 1.0 C A:MSE1 4.7 0.1 1.0 CA A:CA502 4.9 0.3 1.0 C A:ASP44 5.0 0.8 1.0

Calcium binding site 2 out of 6 in the Casposase Bound to Integration Product


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Casposase Bound to Integration Product within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:0.3 occ:1.00 OD2 A:ASP46 3.2 0.4 1.0 CG A:ASP46 3.5 0.1 1.0 OD1 A:ASP46 3.5 0.2 1.0 ND2 A:ASN69 3.7 0.3 1.0 NZ A:LYS217 3.9 0.1 1.0 OP2 F:DC21 4.0 0.7 1.0 O A:ASN69 4.2 0.5 1.0 CA A:ASP46 4.4 0.7 1.0 CB A:ASP46 4.5 0.8 1.0 CE A:LYS217 4.6 0.5 1.0 CD A:LYS217 4.7 0.1 1.0 O A:ASP46 4.7 0.6 1.0 CG A:ASN69 4.9 0.7 1.0 CA A:CA501 4.9 0.1 1.0

Calcium binding site 3 out of 6 in the Casposase Bound to Integration Product


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Casposase Bound to Integration Product within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca501 b:0.5 occ:1.00 OP2 E:DC21 2.8 0.4 1.0 OD1 C:ASP46 3.2 0.4 1.0 CE C:LYS217 3.5 0.6 1.0 O C:HOH604 3.7 1.0 1.0 P E:DC21 4.1 0.2 1.0 CG C:ASP46 4.3 0.8 1.0 CD C:LYS217 4.5 0.8 1.0 NZ C:LYS217 4.5 0.9 1.0 CB C:ASP46 4.6 0.7 1.0 O3' E:DG20 4.6 0.6 1.0 OP1 E:DC21 4.6 0.4 1.0 C3' E:DG20 4.6 0.1 1.0 CA C:CA502 4.7 0.5 1.0

Calcium binding site 4 out of 6 in the Casposase Bound to Integration Product


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Casposase Bound to Integration Product within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca502 b:0.5 occ:1.00 O C:HOH602 2.5 0.4 1.0 OD1 C:ASP46 2.5 0.4 1.0 OD2 C:ASP46 3.0 0.5 1.0 O C:HOH604 3.1 1.0 1.0 CG C:ASP46 3.1 0.8 1.0 CA C:MSE1 3.6 0.6 1.0 N C:MSE1 3.8 0.2 1.0 OP2 E:DC21 3.9 0.4 1.0 CB C:MSE1 4.0 0.9 1.0 CG C:MSE1 4.2 0.3 1.0 CB C:ASP46 4.6 0.7 1.0 O5' E:DC21 4.7 0.0 1.0 CA C:CA501 4.7 0.5 1.0 P E:DC21 4.7 0.2 1.0 C C:MSE1 4.8 0.6 1.0 N C:LYS2 4.8 0.9 1.0 O C:ASP44 4.9 0.7 1.0

Calcium binding site 5 out of 6 in the Casposase Bound to Integration Product


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Casposase Bound to Integration Product within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca101 b:0.4 occ:1.00 O2 E:DC7 2.6 0.9 1.0 OP1 E:DC7 2.6 0.3 1.0 O E:HOH203 2.8 78.4 1.0 O F:HOH201 2.8 0.6 1.0 C2 E:DC7 3.6 0.7 1.0 N3 E:DC7 4.0 0.6 1.0 P E:DC7 4.1 0.9 1.0 N4 E:DC8 4.1 0.8 1.0 C5' E:DC7 4.3 0.8 1.0 O5' E:DC7 4.6 0.6 1.0 C5 E:DC8 4.6 1.0 1.0 C4 E:DC8 4.7 0.1 1.0 C3' E:DC6 4.7 0.7 1.0 O3' E:DC6 4.8 0.5 1.0 O5' E:DC6 4.8 0.6 1.0 N1 E:DC7 4.9 0.0 1.0

Calcium binding site 6 out of 6 in the Casposase Bound to Integration Product


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Casposase Bound to Integration Product within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca101 b:98.8 occ:1.00 OP1 F:DC7 2.2 96.3 1.0 O F:HOH205 2.3 87.8 1.0 O2 F:DC7 2.5 98.5 1.0 O F:HOH204 2.8 65.8 1.0 O F:HOH206 2.9 92.0 1.0 O E:HOH202 3.2 92.6 1.0 C2 F:DC7 3.5 99.5 1.0 P F:DC7 3.6 94.0 1.0 N3 F:DC7 3.8 0.9 1.0 C5' F:DC7 4.1 96.7 1.0 O5' F:DC7 4.2 94.1 1.0 O3' F:DC6 4.4 95.9 1.0 C3' F:DC6 4.4 97.2 1.0 N4 F:DC8 4.5 0.8 1.0 N1 F:DC7 4.7 98.3 1.0 OP2 F:DC7 4.7 89.9 1.0 O4' F:DC7 4.8 97.1 1.0 O5' F:DC6 4.9 96.1 1.0 CE B:MSE194 4.9 0.2 1.0

F.Dyda, A.B.Hickman, S.Kailasan. Casposase Bound to Integration Product To Be Published.