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Calcium in PDB 6ori: Enterococcal Surface Protein, Partial N-Terminal Region

Protein crystallography data

The structure of Enterococcal Surface Protein, Partial N-Terminal Region, PDB code: 6ori was solved by L.Spiegelman, L.Zhang, A.Tezcan, P.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.27 / 1.40
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 39.850, 49.960, 51.240, 107.36, 111.42, 90.43
R / Rfree (%) 15.2 / 17.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Enterococcal Surface Protein, Partial N-Terminal Region (pdb code 6ori). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Enterococcal Surface Protein, Partial N-Terminal Region, PDB code: 6ori:

Calcium binding site 1 out of 1 in 6ori

Go back to Calcium Binding Sites List in 6ori
Calcium binding site 1 out of 1 in the Enterococcal Surface Protein, Partial N-Terminal Region


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Enterococcal Surface Protein, Partial N-Terminal Region within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:10.5
occ:0.83
O A:LEU447 2.2 17.0 1.0
OD1 A:ASP210 2.3 9.6 0.7
OD1 A:ASP421 2.3 11.1 1.0
O A:GLY419 2.3 15.8 1.0
OD1 A:ASP449 2.3 20.3 1.0
O A:SER209 2.4 13.7 1.0
C A:SER209 3.4 14.9 1.0
CG A:ASP449 3.4 22.1 1.0
CG A:ASP421 3.4 13.6 1.0
C A:LEU447 3.4 19.3 1.0
C A:GLY419 3.5 17.4 1.0
CG A:ASP210 3.5 9.7 0.7
N A:ASP421 3.8 11.7 1.0
OD2 A:ASP449 3.9 32.8 1.0
CA A:ASP210 3.9 9.1 0.3
CA A:ASP210 4.0 9.0 0.7
N A:ASP210 4.0 10.9 0.7
OD2 A:ASP421 4.0 12.7 1.0
N A:ASP210 4.1 11.0 0.3
N A:LEU447 4.1 13.0 1.0
CA A:LEU447 4.1 16.7 1.0
CB A:ASP210 4.1 9.3 0.3
C A:GLU420 4.2 13.2 1.0
CB A:LEU447 4.2 21.2 1.0
N A:ASP449 4.2 23.1 1.0
CA A:GLU420 4.3 14.2 1.0
N A:GLU420 4.3 14.4 1.0
CA A:ASP421 4.3 14.7 1.0
CB A:ASP210 4.3 9.5 0.7
CE1 A:TYR446 4.4 15.1 1.0
OD2 A:ASP210 4.4 19.1 0.7
CA A:GLY419 4.4 32.9 1.0
CG A:ASP210 4.4 9.9 0.3
CA A:SER209 4.4 16.7 1.0
CB A:ASP421 4.5 10.9 1.0
OD2 A:ASP210 4.5 24.0 0.3
N A:GLN448 4.5 24.1 1.0
C A:GLN448 4.5 24.4 1.0
CB A:SER209 4.5 21.9 1.0
CD1 A:TYR446 4.5 14.8 1.0
CB A:ASP449 4.6 31.6 1.0
CA A:ASP449 4.7 38.1 1.0
CA A:GLN448 4.7 20.9 1.0
OG A:SER209 4.9 20.6 1.0
O A:GLU420 4.9 13.9 1.0

Reference:

L.Spiegelman, L.Zhang, A.Tezcan, P.Ghosh. Enterococcal Surface Protein, Partial N-Terminal Region (Casp Target) To Be Published.
Page generated: Tue Jul 16 12:35:29 2024

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