Calcium in PDB 6ppo: Rhinovirus C15 Complexed with Domain I of Receptor CDHR3

All present enzymatic activity of Rhinovirus C15 Complexed with Domain I of Receptor CDHR3:
2.7.7.48; 3.4.22.28; 3.4.22.29; 3.6.1.15;

The binding sites of Calcium atom in the Rhinovirus C15 Complexed with Domain I of Receptor CDHR3 (pdb code 6ppo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Rhinovirus C15 Complexed with Domain I of Receptor CDHR3, PDB code: 6ppo:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Rhinovirus C15 Complexed with Domain I of Receptor CDHR3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Rhinovirus C15 Complexed with Domain I of Receptor CDHR3 within 5.0Å range: probe atom residue distance (Å) B Occ U:Ca201 b:30.0 occ:1.00 OD1 U:ASP125 1.8 43.5 1.0 OE2 U:GLU95 2.1 41.4 1.0 CG U:ASP125 2.7 43.5 1.0 ND2 U:ASN127 3.0 30.0 1.0 OD2 U:ASP125 3.0 43.5 1.0 OE1 U:GLU33 3.1 44.2 1.0 CD U:GLU95 3.2 41.4 1.0 CG U:ASN127 3.5 30.0 1.0 CG U:GLU95 3.6 41.4 1.0 O U:VAL126 3.9 46.7 1.0 CA U:CA202 4.0 30.0 1.0 CD U:GLU33 4.1 44.2 1.0 CB U:ASN127 4.1 30.0 1.0 CB U:ASP125 4.1 43.5 1.0 OD1 U:ASN127 4.2 30.0 1.0 OE2 U:GLU33 4.2 44.2 1.0 OE1 U:GLU95 4.2 41.4 1.0 N U:VAL126 4.4 46.7 1.0 C U:VAL126 4.4 46.7 1.0 CA U:ASP125 4.4 43.5 1.0 C U:ASP125 4.5 43.5 1.0 CD2 U:PHE94 4.6 37.7 1.0 N U:ASN127 4.9 30.0 1.0

Calcium binding site 2 out of 3 in the Rhinovirus C15 Complexed with Domain I of Receptor CDHR3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Rhinovirus C15 Complexed with Domain I of Receptor CDHR3 within 5.0Å range: probe atom residue distance (Å) B Occ U:Ca202 b:30.0 occ:1.00 OE2 U:GLU33 1.8 44.2 1.0 OE1 U:GLU95 2.1 41.4 1.0 OE2 U:GLU95 2.2 41.4 1.0 CD U:GLU95 2.4 41.4 1.0 CD U:GLU33 2.9 44.2 1.0 OE1 U:GLU33 3.4 44.2 1.0 CG U:GLU95 3.8 41.4 1.0 CA U:CA201 4.0 30.0 1.0 OD1 U:ASN34 4.1 46.9 1.0 CG U:GLU33 4.1 44.2 1.0 ND2 U:ASN34 4.3 46.9 1.0 O U:VAL126 4.5 46.7 1.0 CG U:ASN34 4.7 46.9 1.0 CB U:GLU95 4.7 41.4 1.0 OD1 U:ASP93 4.8 42.3 1.0 CA U:CA203 4.9 30.0 1.0

Calcium binding site 3 out of 3 in the Rhinovirus C15 Complexed with Domain I of Receptor CDHR3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Rhinovirus C15 Complexed with Domain I of Receptor CDHR3 within 5.0Å range: probe atom residue distance (Å) B Occ U:Ca203 b:30.0 occ:1.00 OD1 U:ASN127 1.6 30.0 1.0 CG U:ASN127 2.8 30.0 1.0 ND2 U:ASN127 3.5 30.0 1.0 O U:VAL126 3.8 46.7 1.0 CB U:ASN127 4.0 30.0 1.0 CA U:ASN127 4.0 30.0 1.0 C U:VAL126 4.7 46.7 1.0 N U:ASN127 4.9 30.0 1.0 CA U:CA202 4.9 30.0 1.0

Y.Sun, K.Watters, M.G.Hill, Q.Fang, Y.Liu, R.J.Kuhn, T.Klose, M.G.Rossmann, A.C.Palmenberg. Cryo-Em Structure of Rhinovirus C15A Bound to Its Cadherin-Related Protein 3 Receptor Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1921640117