Calcium in PDB 6pq0: Lcp-Embedded Proteinase K Treated with Mpd

All present enzymatic activity of Lcp-Embedded Proteinase K Treated with Mpd:
3.4.21.64;

The binding sites of Calcium atom in the Lcp-Embedded Proteinase K Treated with Mpd (pdb code 6pq0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Lcp-Embedded Proteinase K Treated with Mpd, PDB code: 6pq0:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Lcp-Embedded Proteinase K Treated with Mpd


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Lcp-Embedded Proteinase K Treated with Mpd within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:5.3 occ:1.00 O A:VAL282 2.4 1.9 1.0 O A:PRO280 2.5 1.4 1.0 OD2 A:ASP305 2.5 3.5 1.0 O A:HOH529 2.6 2.8 1.0 OD1 A:ASP305 2.7 5.6 1.0 O A:HOH541 2.7 12.6 1.0 O A:HOH512 2.8 2.2 1.0 CG A:ASP305 2.8 3.9 1.0 C A:PRO280 3.5 1.4 1.0 C A:VAL282 3.6 1.2 1.0 CA A:PRO280 4.1 8.6 1.0 N A:VAL282 4.2 2.0 1.0 CB A:ASP305 4.3 3.2 1.0 C A:SER281 4.4 2.3 1.0 O A:VAL303 4.4 4.1 1.0 N A:SER281 4.4 1.1 1.0 N A:CYS283 4.5 3.3 1.0 CA A:CYS283 4.5 1.6 1.0 O A:GLU279 4.6 2.6 1.0 CA A:VAL282 4.6 1.9 1.0 N A:THR284 4.6 3.4 1.0 CA A:SER281 4.7 2.2 1.0 O A:HOH579 4.7 7.0 1.0 O A:HOH563 4.8 16.3 1.0 O A:SER281 4.8 3.3 1.0 SG A:CYS354 4.8 2.0 1.0

Calcium binding site 2 out of 2 in the Lcp-Embedded Proteinase K Treated with Mpd


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Lcp-Embedded Proteinase K Treated with Mpd within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:19.6 occ:1.00 O A:THR121 2.6 9.1 1.0 OD2 A:ASP365 2.6 13.6 1.0 OD1 A:ASP365 2.8 14.3 1.0 CG A:ASP365 3.1 16.5 1.0 C A:THR121 3.6 10.8 1.0 CB A:THR121 4.1 5.7 1.0 CA A:THR121 4.3 9.4 1.0 CB A:ASP365 4.5 11.6 1.0 N A:SER122 4.6 9.8 1.0 OG A:SER122 4.7 9.2 1.0 OG1 A:THR121 4.7 10.3 1.0 OD1 A:ASN362 4.7 6.8 1.0 CA A:SER122 4.8 9.1 1.0

L.Zhu, G.Bu, L.Jing, D.Shi, M.Y.Lee, T.Gonen, W.Liu, B.L.Nannenga. Structure Determination From Lipidic Cubic Phase Embedded Microcrystals By Microed. Structure V. 28 1149 2020.
ISSN: ISSN 0969-2126
PubMed: 32735770
DOI: 10.1016/J.STR.2020.07.006