Calcium in PDB 6t8l: Crystal Structure of Bacteroides Thetaiotamicron Endobt-3987 with MAN9GLCNAC Product in P212121

The structure of Crystal Structure of Bacteroides Thetaiotamicron Endobt-3987 with MAN9GLCNAC Product in P212121, PDB code: 6t8l was solved by B.Trastoy, J.J.Du, E.H.Klontz, J.O.Cifuente, E.J.Sundberg, M.E.Guerin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.18 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.377, 76.310, 116.713, 90.00, 90.00, 90.00
R / Rfree (%)	15.9 / 18.9

The binding sites of Calcium atom in the Crystal Structure of Bacteroides Thetaiotamicron Endobt-3987 with MAN9GLCNAC Product in P212121 (pdb code 6t8l). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Bacteroides Thetaiotamicron Endobt-3987 with MAN9GLCNAC Product in P212121, PDB code: 6t8l:

Calcium binding site 1 out of 1 in the Crystal Structure of Bacteroides Thetaiotamicron Endobt-3987 with MAN9GLCNAC Product in P212121


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Bacteroides Thetaiotamicron Endobt-3987 with MAN9GLCNAC Product in P212121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca511 b:13.1 occ:0.97 O A:GLY356 2.4 11.4 1.0 O A:HOH756 2.5 12.0 1.0 O A:HOH899 2.5 16.5 1.0 O A:HOH673 2.5 16.1 1.0 O A:HOH939 2.6 19.0 1.0 O A:HOH748 2.6 12.0 1.0 C A:GLY356 3.6 12.7 1.0 O A:TYR359 4.1 13.2 1.0 OD1 A:ASP354 4.2 13.9 1.0 CA A:GLN357 4.3 11.0 1.0 O A:HOH713 4.4 13.6 1.0 N A:GLN357 4.4 13.8 1.0 N A:GLY356 4.5 10.9 1.0 C A:TRP355 4.6 10.5 1.0 CA A:GLY356 4.6 14.7 1.0 O A:TRP355 4.6 12.0 1.0 C A:GLN357 4.8 11.6 1.0 N A:MET358 4.8 10.9 1.0 OG1 A:THR331 4.9 19.4 1.0

B.Trastoy, J.J.Du, E.H.Klontz, C.Li, J.O.Cifuente, L.X.Wang, E.J.Sundberg, M.E.Guerin. Structural Basis of Mammalian High-Mannose N-Glycan Processing By Human Gut Bacteroides. Nat Commun V. 11 899 2020.
ISSN: ESSN 2041-1723
PubMed: 32060313
DOI: 10.1038/S41467-020-14754-7