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Calcium in PDB 6tck: Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2

Enzymatic activity of Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2

All present enzymatic activity of Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2:
5.6.2.2;

Protein crystallography data

The structure of Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2, PDB code: 6tck was solved by M.Welin, R.Kimbung, D.Focht, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.59 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 143.594, 55.429, 50.976, 90.00, 101.00, 90.00
R / Rfree (%) 17.7 / 20

Other elements in 6tck:

The structure of Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2 also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2 (pdb code 6tck). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2, PDB code: 6tck:

Calcium binding site 1 out of 1 in 6tck

Go back to Calcium Binding Sites List in 6tck
Calcium binding site 1 out of 1 in the Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Atp Binding Domain of S. Aureus Gyrb Complexed with Uld-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca306

b:79.5
occ:1.00
O B:HOH432 2.4 70.6 1.0
OE1 B:GLU224 2.7 31.8 1.0
OE2 B:GLU224 3.4 29.0 1.0
CD B:GLU224 3.4 26.9 1.0
CG B:GLU224 4.9 23.9 1.0
O B:HOH449 4.9 40.9 1.0

Reference:

A.Nyerges, T.Tomasic, M.Durcik, T.Revesz, P.Szili, G.Draskovits, F.Bogar, Z.Skok, N.Zidar, J.Ilas, A.Zega, D.Kikelj, L.Daruka, B.Kintses, B.Vasarhelyi, I.Foldesi, D.Kata, M.Welin, R.Kimbung, D.Focht, L.P.Masic, C.Pal. Rational Design of Balanced Dual-Targeting Antibiotics with Limited Resistance. Plos Biol. V. 18 00819 2020.
ISSN: ESSN 1545-7885
PubMed: 33017402
DOI: 10.1371/JOURNAL.PBIO.3000819
Page generated: Tue Jul 16 15:14:15 2024

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