Calcium in PDB 6tit: Vsv G_440

The structure of Vsv G_440, PDB code: 6tit was solved by A.A.Albertini, L.Belot, A.Abouhamdan, Y.Gaudin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.82 / 2.07
Space group	P 6 2 2
Cell size a, b, c (Å), α, β, γ (°)	120.950, 120.950, 200.320, 90.00, 90.00, 120.00
R / Rfree (%)	20.7 / 24.2

The binding sites of Calcium atom in the Vsv G_440 (pdb code 6tit). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Vsv G_440, PDB code: 6tit:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Vsv G_440


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Vsv G_440 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca510 b:74.2 occ:1.00 OG A:SER190 2.2 54.4 1.0 H A:SER190 2.9 59.3 1.0 O A:ILE37 3.0 53.0 1.0 O A:PHE188 3.1 46.0 1.0 N A:SER190 3.1 49.4 1.0 HA2 A:GLY193 3.1 54.9 1.0 HG22 A:THR39 3.2 68.3 1.0 HD2 A:PHE188 3.3 65.7 1.0 HA A:PHE189 3.3 55.5 1.0 CB A:SER190 3.3 52.5 1.0 HG21 A:THR39 3.4 68.3 1.0 C A:GLY193 3.5 65.2 1.0 HB3 A:SER190 3.6 63.0 1.0 C A:PHE189 3.6 56.6 1.0 CD2 A:PHE188 3.6 54.8 1.0 HE2 A:PHE188 3.6 57.9 1.0 O A:GLY193 3.6 56.4 1.0 CA A:GLY193 3.7 45.8 1.0 CA A:SER190 3.7 56.7 1.0 CG2 A:THR39 3.8 56.9 1.0 CE2 A:PHE188 3.8 48.2 1.0 HA2 A:GLY38 3.8 52.9 1.0 CA A:PHE189 3.8 46.2 1.0 H A:GLY193 3.8 56.2 1.0 C A:PHE188 3.8 45.3 1.0 N A:GLU194 3.9 52.0 1.0 H A:GLU194 4.0 62.4 1.0 H A:THR39 4.0 62.9 1.0 C A:ILE37 4.1 50.2 1.0 HB2 A:SER190 4.1 63.0 1.0 N A:GLY193 4.1 46.8 1.0 N A:PHE189 4.1 41.8 1.0 O A:SER190 4.2 58.2 1.0 HB A:THR39 4.3 73.0 1.0 HB A:ILE37 4.3 63.4 1.0 N A:THR39 4.3 52.4 1.0 O A:PHE189 4.4 51.8 1.0 C A:SER190 4.5 59.4 1.0 CG A:PHE188 4.5 48.3 1.0 HG22 A:ILE37 4.5 64.8 1.0 CA A:GLY38 4.5 44.0 1.0 HG23 A:THR39 4.5 68.3 1.0 HA A:SER190 4.5 68.1 1.0 O A:GLU194 4.5 51.4 1.0 HA3 A:GLY193 4.5 54.9 1.0 CB A:THR39 4.6 60.8 1.0 C A:GLU194 4.6 62.2 1.0 C A:GLY38 4.6 60.6 1.0 HD23 A:LEU195 4.7 70.2 1.0 N A:GLY38 4.7 47.1 1.0 HB3 A:PHE188 4.7 57.1 1.0 CZ A:PHE188 4.7 50.0 1.0 CA A:GLU194 4.8 67.3 1.0 H A:PHE189 4.8 50.2 1.0 H A:ASP192 4.9 82.2 1.0 H A:ILE37 4.9 66.2 1.0 CB A:PHE188 5.0 47.6 1.0 N A:LEU195 5.0 55.1 1.0

Calcium binding site 2 out of 4 in the Vsv G_440


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Vsv G_440 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca511 b:81.6 occ:1.00 HZ2 A:LYS47 2.4 92.3 1.0 HD2 A:LYS47 2.7 77.3 1.0 HZ3 A:LYS50 2.9 52.9 1.0 HZ2 A:LYS50 3.1 52.9 1.0 O A:HOH801 3.1 62.3 1.0 HG3 A:LYS47 3.2 75.2 1.0 NZ A:LYS47 3.2 76.9 1.0 NZ A:LYS50 3.4 44.1 1.0 CD A:LYS47 3.4 64.4 1.0 HZ3 A:LYS47 3.4 92.3 1.0 HZ1 A:LYS50 3.6 52.9 1.0 CZ A:TYR209 3.7 49.0 1.0 OH A:TYR209 3.7 54.9 1.0 CE1 A:TYR209 3.7 43.6 1.0 HE1 A:TYR209 3.7 52.3 1.0 CE A:LYS47 3.8 72.0 1.0 CG A:LYS47 3.8 62.6 1.0 HZ1 A:LYS47 3.8 92.3 1.0 HE1 A:HIS8 3.9 79.7 1.0 HE3 A:LYS47 4.0 86.5 1.0 O3 A:GOL506 4.1 44.6 1.0 HH A:TYR209 4.2 65.9 1.0 HD3 A:LYS47 4.2 77.3 1.0 CE2 A:TYR209 4.3 40.9 1.0 HE2 A:MET184 4.3 59.2 1.0 HE1 A:MET184 4.4 59.2 1.0 HG2 A:LYS47 4.4 75.2 1.0 CD1 A:TYR209 4.4 42.2 1.0 HD3 A:LYS50 4.6 63.9 1.0 HB2 A:LYS47 4.6 63.5 1.0 H32 A:GOL506 4.6 63.6 1.0 HE2 A:TYR209 4.6 49.1 1.0 HE2 A:LYS47 4.6 86.5 1.0 HO3 A:GOL506 4.7 53.6 1.0 CE A:LYS50 4.7 49.5 1.0 CE A:MET184 4.8 49.3 1.0 O A:HOH709 4.8 64.2 1.0 CE1 A:HIS8 4.8 66.4 1.0 HD1 A:TYR209 4.8 50.7 1.0 CB A:LYS47 4.9 52.9 1.0 C3 A:GOL506 4.9 53.0 1.0 CD2 A:TYR209 4.9 40.7 1.0 CG A:TYR209 5.0 41.9 1.0

Calcium binding site 3 out of 4 in the Vsv G_440


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Vsv G_440 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca512 b:0.2 occ:1.00 O A:HOH772 3.1 54.3 1.0 HG2 A:GLU286 3.1 57.0 1.0 O A:HOH806 3.9 63.9 0.3 CG A:GLU286 4.0 47.5 1.0 O A:HOH808 4.2 44.0 1.0 CD A:GLU286 4.3 57.0 1.0 HG3 A:GLU286 4.5 57.0 1.0 OE2 A:GLU286 4.6 56.7 1.0 HB2 A:GLU286 4.8 43.6 1.0 OE1 A:GLU286 4.9 56.0 1.0

Calcium binding site 4 out of 4 in the Vsv G_440


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Vsv G_440 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca513 b:86.0 occ:1.00 HZ3 A:LYS242 2.5 71.0 1.0 H A:MET239 2.5 48.1 1.0 HG3 A:GLU238 3.0 58.3 1.0 HA2 A:GLY228 3.0 50.3 1.0 HB2 A:MET239 3.0 58.7 1.0 O A:TRP227 3.1 43.1 1.0 NZ A:LYS242 3.1 59.1 1.0 HZ1 A:LYS242 3.1 71.0 1.0 CD2 A:PHE245 3.1 43.9 1.0 N A:MET239 3.2 40.1 1.0 CG A:PHE245 3.2 44.8 1.0 HD2 A:PHE245 3.3 52.7 1.0 HD2 A:LYS242 3.4 77.3 1.0 HA A:GLU238 3.4 49.5 1.0 HE2 A:LYS242 3.5 85.8 1.0 CE2 A:PHE245 3.5 39.1 1.0 HB2 A:PHE245 3.5 52.3 1.0 HG2 A:GLU238 3.5 58.3 1.0 CE A:LYS242 3.6 71.5 1.0 O A:MET239 3.6 48.2 1.0 CD1 A:PHE245 3.6 38.8 1.0 CG A:GLU238 3.7 48.5 1.0 HD3 A:LYS242 3.7 77.3 1.0 CD A:LYS242 3.8 64.4 1.0 CB A:PHE245 3.8 43.5 1.0 CZ A:PHE245 3.8 42.4 1.0 CB A:MET239 3.9 48.9 1.0 HZ2 A:LYS242 3.9 71.0 1.0 HE2 A:PHE245 3.9 47.0 1.0 C A:TRP227 3.9 39.9 1.0 CA A:GLY228 3.9 41.9 1.0 CE1 A:PHE245 3.9 44.6 1.0 CA A:MET239 3.9 47.7 1.0 HB3 A:PHE245 4.0 52.3 1.0 C A:GLU238 4.1 43.6 1.0 CA A:GLU238 4.1 41.2 1.0 HD1 A:PHE245 4.1 46.5 1.0 C A:MET239 4.2 49.5 1.0 N A:GLY228 4.3 45.9 1.0 HG3 A:MET239 4.3 47.7 1.0 HA3 A:GLY228 4.4 50.3 1.0 HZ A:PHE245 4.4 50.9 1.0 CB A:GLU238 4.4 43.4 1.0 HB3 A:MET239 4.5 58.7 1.0 HA A:LYS242 4.6 52.7 1.0 HE1 A:PHE245 4.6 53.5 1.0 HE3 A:LYS242 4.6 85.8 1.0 CG A:MET239 4.6 39.7 1.0 HG23 A:VAL229 4.7 48.2 1.0 HB3 A:TRP227 4.8 52.0 1.0 HB2 A:GLU238 4.8 52.1 1.0 CD A:GLU238 4.8 56.4 1.0 HB2 A:TRP227 4.8 52.0 1.0 HA A:MET239 4.9 57.2 1.0 C A:GLY228 4.9 38.0 1.0 OE1 A:GLU238 4.9 63.4 1.0

A.A.Albertini, L.Belot, A.Abouhamdan, Y.Gaudin. Vsv G_440 To Be Published.