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Calcium in PDB 6u5p: Calcium-Bound Mthk Gating Ring State 1

Calcium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Calcium atom in the Calcium-Bound Mthk Gating Ring State 1 (pdb code 6u5p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 24 binding sites of Calcium where determined in the Calcium-Bound Mthk Gating Ring State 1, PDB code: 6u5p:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 24 in 6u5p

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Calcium binding site 1 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:29.5
occ:1.00
 OE1 A:GLU210 2.5 26.0 1.0
OD2 A:ASP184 2.6 22.2 1.0
CG A:ASP184 3.3 22.2 1.0
OD1 A:ASP184 3.3 22.2 1.0
CD A:GLU210 3.6 26.0 1.0
O A:HOH501 4.1 22.6 1.0
OG A:SER124 4.2 32.3 1.0
OE2 A:GLU210 4.2 26.0 1.0
OG A:SER126 4.2 27.9 1.0
OE2 A:GLU212 4.5 36.2 1.0
CB A:ASP184 4.7 22.2 1.0
CG A:GLU210 4.7 26.0 1.0
CB A:SER124 4.7 32.3 1.0
O A:LEU185 4.7 21.9 1.0
CB A:GLU210 4.8 26.0 1.0
CE2 E:PHE232 4.9 18.7 1.0

Calcium binding site 2 out of 24 in 6u5p

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Calcium binding site 2 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:38.9
occ:1.00
 OE1 E:GLU266 2.5 49.0 1.0
O A:ARG241 2.5 33.7 1.0
O A:ASP245 2.5 38.6 1.0
OE1 A:GLU248 3.2 36.7 1.0
CD E:GLU266 3.3 49.0 1.0
OE2 E:GLU266 3.3 49.0 1.0
OD2 A:ASP245 3.4 38.6 1.0
C A:ASP245 3.6 38.6 1.0
C A:ARG241 3.7 33.7 1.0
OE2 A:GLU248 3.7 36.7 1.0
N A:ASP245 3.7 38.6 1.0
CD A:GLU248 3.9 36.7 1.0
CA A:ASP245 4.3 38.6 1.0
CB A:ASP244 4.4 34.3 1.0
CA A:ARG241 4.5 33.7 1.0
CG A:ASP245 4.5 38.6 1.0
N A:SER242 4.6 29.2 1.0
CA A:SER242 4.6 29.2 1.0
N A:ASP244 4.6 34.3 1.0
N A:GLY246 4.7 36.5 1.0
CG E:GLU266 4.7 49.0 1.0
C A:ASP244 4.7 34.3 1.0
CB A:ARG241 4.8 33.7 1.0
CA A:ASP244 4.8 34.3 1.0
CA A:GLY246 4.9 36.5 1.0
CB A:ASP245 5.0 38.6 1.0
C A:SER242 5.0 29.2 1.0
N A:ILE243 5.0 30.7 1.0

Calcium binding site 3 out of 24 in 6u5p

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Calcium binding site 3 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:65.7
occ:1.00
 OD2 E:ASP305 2.5 63.3 1.0
O A:GLY290 2.5 68.1 1.0
OD1 E:ASP305 2.6 63.3 1.0
OE2 A:GLU326 2.6 70.7 1.0
CG E:ASP305 2.9 63.3 1.0
OE1 A:GLU326 3.1 70.7 1.0
CD A:GLU326 3.2 70.7 1.0
C A:GLY290 3.7 68.1 1.0
CA A:GLY290 4.2 68.1 1.0
CB E:ASP305 4.3 63.3 1.0
CG A:GLU326 4.6 70.7 1.0
O E:PRO306 4.6 66.2 1.0
CE1 A:HIS286 4.6 68.4 1.0
O E:ASP305 4.6 63.3 1.0
N A:VAL291 4.8 64.6 1.0
C E:ASP305 4.9 63.3 1.0

Calcium binding site 4 out of 24 in 6u5p

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Calcium binding site 4 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca401

b:70.4
occ:1.00
 OD2 A:ASP305 2.5 65.5 1.0
OE2 E:GLU326 2.6 73.6 1.0
O E:GLY290 2.6 64.6 1.0
OE1 E:GLU326 2.7 73.6 1.0
CD E:GLU326 2.9 73.6 1.0
CG A:ASP305 3.2 65.5 1.0
OD1 A:ASP305 3.3 65.5 1.0
C E:GLY290 3.7 64.6 1.0
CA E:GLY290 4.1 64.6 1.0
CG E:GLU326 4.4 73.6 1.0
CB A:ASP305 4.7 65.5 1.0
N E:VAL291 4.8 59.3 1.0
CD E:LYS323 4.9 72.5 1.0
NE2 E:HIS286 4.9 63.9 1.0
O A:ASP305 4.9 65.5 1.0

Calcium binding site 5 out of 24 in 6u5p

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Calcium binding site 5 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca402

b:44.5
occ:1.00
 OD2 E:ASP184 2.5 28.5 1.0
O E:HOH501 2.6 22.0 1.0
OE2 E:GLU210 2.8 24.0 1.0
OE1 E:GLU212 3.0 27.6 1.0
CG E:ASP184 3.5 28.5 1.0
OD1 E:ASP184 3.8 28.5 1.0
CD E:GLU210 3.9 24.0 1.0
CD E:GLU212 3.9 27.6 1.0
O E:LEU185 3.9 24.5 1.0
OE2 E:GLU212 4.1 27.6 1.0
CG E:GLU210 4.2 24.0 1.0
OG E:SER124 4.7 33.2 1.0
CB E:ASP184 4.9 28.5 1.0
OE1 E:GLU210 5.0 24.0 1.0

Calcium binding site 6 out of 24 in 6u5p

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Calcium binding site 6 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca403

b:38.4
occ:1.00
 O E:ARG241 2.5 32.0 1.0
OE1 A:GLU266 2.5 57.0 1.0
OE2 A:GLU266 2.5 57.0 1.0
O E:ASP245 2.6 45.9 1.0
CD A:GLU266 2.9 57.0 1.0
OE1 E:GLU248 3.0 41.0 1.0
OD1 E:ASP245 3.2 45.9 1.0
C E:ASP245 3.7 45.9 1.0
C E:ARG241 3.7 32.0 1.0
N E:ASP245 3.9 45.9 1.0
CD E:GLU248 4.0 41.0 1.0
CG E:ASP245 4.2 45.9 1.0
CA E:ASP245 4.3 45.9 1.0
CG A:GLU266 4.4 57.0 1.0
OE2 E:GLU248 4.4 41.0 1.0
CA E:ARG241 4.6 32.0 1.0
N E:SER242 4.7 29.0 1.0
CB E:ASP244 4.7 40.1 1.0
CA E:SER242 4.7 29.0 1.0
CB E:ARG241 4.8 32.0 1.0
N E:GLY246 4.8 41.3 1.0
CB E:ASP245 4.9 45.9 1.0
N E:ASP244 4.9 40.1 1.0
C E:ASP244 5.0 40.1 1.0

Calcium binding site 7 out of 24 in 6u5p

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Calcium binding site 7 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:38.8
occ:1.00
 OD1 B:ASP184 2.5 24.9 1.0
OE2 B:GLU212 2.6 28.3 1.0
OE2 B:GLU210 3.1 22.2 1.0
CG B:ASP184 3.4 24.9 1.0
OG B:SER124 3.5 28.2 1.0
OD2 B:ASP184 3.6 24.9 1.0
CD B:GLU212 3.7 28.3 1.0
CB B:SER124 3.9 28.2 1.0
OE1 B:GLU212 4.1 28.3 1.0
O B:LEU185 4.1 24.0 1.0
CD B:GLU210 4.3 22.2 1.0
CB B:ASP184 4.9 24.9 1.0
CG B:GLU212 4.9 28.3 1.0
OG B:SER126 4.9 25.7 1.0
OE1 B:GLU210 5.0 22.2 1.0

Calcium binding site 8 out of 24 in 6u5p

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Calcium binding site 8 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca402

b:41.1
occ:1.00
 O B:ARG241 2.5 33.8 1.0
OE1 F:GLU266 2.5 59.3 1.0
O B:ASP245 2.6 47.7 1.0
OE2 F:GLU266 2.6 59.3 1.0
OE1 B:GLU248 2.7 43.8 1.0
CD F:GLU266 2.8 59.3 1.0
OE2 B:GLU248 3.2 43.8 1.0
CD B:GLU248 3.3 43.8 1.0
OD1 B:ASP245 3.4 47.7 1.0
C B:ASP245 3.7 47.7 1.0
C B:ARG241 3.7 33.8 1.0
N B:ASP245 4.0 47.7 1.0
CG F:GLU266 4.3 59.3 1.0
CA B:ASP245 4.4 47.7 1.0
CG B:ASP245 4.5 47.7 1.0
CA B:ARG241 4.5 33.8 1.0
CB B:ARG241 4.6 33.8 1.0
N B:SER242 4.7 29.7 1.0
N B:GLY246 4.7 44.8 1.0
N B:TYR247 4.7 52.2 1.0
CB B:ASP244 4.7 42.4 1.0
CA B:SER242 4.8 29.7 1.0
CG B:GLU248 4.8 43.8 1.0
CA B:GLY246 4.9 44.8 1.0

Calcium binding site 9 out of 24 in 6u5p

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Calcium binding site 9 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca403

b:30.4
occ:1.00
 O F:ARG241 2.5 30.4 1.0
OE1 B:GLU266 2.5 54.2 1.0
O F:ASP245 2.6 42.8 1.0
OE2 B:GLU266 3.2 54.2 1.0
CD B:GLU266 3.2 54.2 1.0
OD1 F:ASP245 3.4 42.8 1.0
C F:ASP245 3.7 42.8 1.0
C F:ARG241 3.7 30.4 1.0
N F:ASP245 3.8 42.8 1.0
OE2 F:GLU248 3.9 41.0 1.0
CA F:ASP245 4.4 42.8 1.0
CB F:ASP244 4.4 39.7 1.0
CD F:GLU248 4.4 41.0 1.0
CG F:ASP245 4.5 42.8 1.0
CA F:SER242 4.6 28.8 1.0
N F:SER242 4.6 28.8 1.0
CA F:ARG241 4.6 30.4 1.0
CG B:GLU266 4.7 54.2 1.0
CG F:GLU248 4.7 41.0 1.0
N F:ASP244 4.8 39.7 1.0
N F:GLY246 4.8 38.2 1.0
CB F:ARG241 4.8 30.4 1.0
C F:ASP244 4.9 39.7 1.0
CA F:ASP244 4.9 39.7 1.0
CB F:ASP245 5.0 42.8 1.0

Calcium binding site 10 out of 24 in 6u5p

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Calcium binding site 10 out of 24 in the Calcium-Bound Mthk Gating Ring State 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Calcium-Bound Mthk Gating Ring State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca404

b:75.6
occ:1.00
 OD2 F:ASP305 2.6 67.6 1.0
OE2 B:GLU326 2.6 72.2 1.0
O B:GLY290 2.6 70.9 1.0
OD1 F:ASP305 2.8 67.6 1.0
CG F:ASP305 3.0 67.6 1.0
CD B:GLU326 3.5 72.2 1.0
OE1 B:GLU326 3.7 72.2 1.0
C B:GLY290 3.7 70.9 1.0
CA B:GLY290 4.1 70.9 1.0
CB F:ASP305 4.4 67.6 1.0
CE1 B:HIS286 4.5 69.5 1.0
O F:ASP305 4.6 67.6 1.0
O F:PRO306 4.7 71.0 1.0
N B:VAL291 4.8 64.5 1.0
CG B:GLU326 4.8 72.2 1.0

Reference:

C.Fan, N.Sukomon, E.Flood, J.Rheinberger, T.W.Allen, C.M.Nimigean. Ball-and-Chain Inactivation in A Calcium-Gated Potassium Channel Nature 2020.
ISSN: ESSN 1476-4687
Page generated: Wed Jul 9 18:26:56 2025

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