Calcium in PDB 6ucm: Transcription Factor Deltafosb Bzip Domain Self-Assembly, Type-II Crystal

The structure of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Type-II Crystal, PDB code: 6ucm was solved by Z.Yin, M.Machius, G.Rudenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.38 / 2.42
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.925, 101.925, 51.347, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 24.5

The binding sites of Calcium atom in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Type-II Crystal (pdb code 6ucm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Type-II Crystal, PDB code: 6ucm:

Calcium binding site 1 out of 1 in the Transcription Factor Deltafosb Bzip Domain Self-Assembly, Type-II Crystal


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Transcription Factor Deltafosb Bzip Domain Self-Assembly, Type-II Crystal within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca304 b:66.9 occ:1.00 HB3 A:ASP188 3.2 43.0 1.0 OD1 C:ASN165 3.3 66.1 1.0 HG3 A:GLU192 3.5 54.6 1.0 HA C:ASN165 3.8 40.9 1.0 HB2 C:ALA168 3.9 24.5 1.0 HG2 A:GLU192 3.9 54.6 1.0 HB3 C:ALA168 4.1 24.5 1.0 CB A:ASP188 4.1 35.8 1.0 HE21 A:GLN189 4.1 37.4 1.0 O A:HOH403 4.1 27.4 1.0 CG A:GLU192 4.1 45.5 1.0 HB2 A:ASP188 4.2 43.0 1.0 HB3 C:ARG164 4.3 31.6 1.0 O C:ARG164 4.3 24.5 1.0 CB C:ALA168 4.3 20.4 1.0 NE2 A:GLN189 4.4 31.1 1.0 HE22 A:GLN189 4.4 37.4 1.0 HB1 C:ALA168 4.4 24.5 1.0 CG C:ASN165 4.5 60.8 1.0 OE2 A:GLU192 4.6 50.1 1.0 HA A:GLN189 4.6 25.4 1.0 CA C:ASN165 4.6 34.0 1.0 CD A:GLU192 4.6 44.3 1.0 O A:ASP188 4.6 27.5 1.0 C C:ARG164 4.6 28.7 1.0 C A:ASP188 4.6 25.0 1.0 O A:HOH406 4.7 47.7 1.0 N C:ASN165 4.8 27.6 1.0 N A:GLN189 4.9 27.3 1.0 HB2 C:ARG164 5.0 31.6 1.0 CA A:ASP188 5.0 29.9 1.0

Y.Zhou, H.Venkannagari, H.Lynch, G.Aglyamova, M.Bhandari, M.Machius, E.J.Nestler, A.J.Robison, G.Rudenko. Self-Assembly of the Bzip Transcription Factor Delta-Fosb Curr Res Struct Biol 2019.
DOI: 10.1016/J.CRSTBI.2019.12.001