Calcium in PDB 6uzd: Anthrax Toxin Protective Antigen Channels Bound to Edema Factor

All present enzymatic activity of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor:
4.6.1.1;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor (pdb code 6uzd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor, PDB code: 6uzd:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:22.9 occ:1.00 OD1 A:ASP179 2.4 21.2 1.0 O A:ILE183 2.4 21.0 1.0 OE2 A:GLU188 2.5 19.1 1.0 OD1 A:ASP181 2.5 19.4 1.0 OD1 A:ASP177 2.6 24.6 1.0 OD2 A:ASP179 3.0 21.2 1.0 CG A:ASP179 3.1 21.2 1.0 CG A:ASP181 3.4 19.4 1.0 OD2 A:ASP181 3.5 19.4 1.0 CD A:GLU188 3.6 19.1 1.0 C A:ILE183 3.6 21.0 1.0 CG A:ASP177 3.8 24.6 1.0 CG2 A:ILE183 3.9 21.0 1.0 OD1 A:ASP185 4.0 24.2 1.0 CG A:GLU188 4.1 19.1 1.0 O A:PRO184 4.2 21.4 1.0 C A:PRO184 4.3 21.4 1.0 CA A:CA802 4.3 19.7 1.0 N A:ILE183 4.3 21.0 1.0 OD2 A:ASP177 4.4 24.6 1.0 CA A:ILE183 4.4 21.0 1.0 O A:PRO223 4.5 17.5 1.0 CB A:ASP179 4.5 21.2 1.0 N A:PRO184 4.6 21.4 1.0 CA A:PRO184 4.6 21.4 1.0 OE1 A:GLU188 4.6 19.1 1.0 CB A:ILE183 4.7 21.0 1.0 N A:ASP185 4.7 24.2 1.0 N A:ASP179 4.7 21.2 1.0 N A:ASP181 4.7 19.4 1.0 CA A:ASP177 4.7 24.6 1.0 CA A:PRO223 4.8 17.5 1.0 CB A:ASP181 4.8 19.4 1.0 N A:ARG178 4.8 26.4 1.0 CB A:ASP177 4.9 24.6 1.0 C A:PRO223 4.9 17.5 1.0 CA A:ASP185 4.9 24.2 1.0 N A:ASN180 4.9 22.6 1.0

Calcium binding site 2 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca802 b:19.7 occ:1.00 OD2 A:ASP235 2.5 14.9 1.0 OD2 A:ASP179 2.5 21.2 1.0 OE1 A:GLU188 2.5 19.1 1.0 O A:LYS225 2.5 17.1 1.0 OE2 A:GLU188 2.5 19.1 1.0 O A:SER222 2.6 16.8 1.0 OD2 A:ASP181 2.6 19.4 1.0 CD A:GLU188 2.9 19.1 1.0 CG A:ASP235 3.6 14.9 1.0 CG A:ASP179 3.7 21.2 1.0 CG A:ASP181 3.7 19.4 1.0 C A:LYS225 3.7 17.1 1.0 C A:SER222 3.8 16.8 1.0 CB A:ASP235 4.3 14.9 1.0 CA A:CA801 4.3 22.9 1.0 OG A:SER221 4.3 17.2 1.0 OG1 A:THR228 4.3 15.7 1.0 CG A:GLU188 4.4 19.1 1.0 OD1 A:ASP181 4.4 19.4 1.0 N A:LYS225 4.4 17.1 1.0 N A:SER222 4.5 16.8 1.0 OG A:SER222 4.5 16.8 1.0 CA A:PRO223 4.5 17.5 1.0 OD1 A:ASP179 4.6 21.2 1.0 CB A:ASP179 4.6 21.2 1.0 OD1 A:ASP235 4.6 14.9 1.0 N A:PRO223 4.6 17.5 1.0 CA A:TRP226 4.6 18.2 1.0 CA A:LYS225 4.6 17.1 1.0 N A:TRP226 4.7 18.2 1.0 C A:TRP226 4.7 18.2 1.0 CB A:ASP181 4.7 19.4 1.0 O A:TRP226 4.7 18.2 1.0 CA A:SER222 4.7 16.8 1.0 C A:PRO223 4.7 17.5 1.0 N A:GLU224 4.9 20.9 1.0 CB A:SER221 5.0 17.2 1.0

Calcium binding site 3 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:22.5 occ:1.00 OD1 B:ASP179 2.4 21.3 1.0 OE2 B:GLU188 2.4 18.1 1.0 O B:ILE183 2.4 18.3 1.0 OD1 B:ASP177 2.5 25.3 1.0 OD1 B:ASP181 2.5 18.8 1.0 OD1 B:ASP185 3.0 23.1 1.0 OD2 B:ASP179 3.1 21.3 1.0 CG B:ASP179 3.1 21.3 1.0 CD B:GLU188 3.5 18.1 1.0 CG B:ASP181 3.5 18.8 1.0 CG B:ASP177 3.7 25.3 1.0 C B:ILE183 3.7 18.3 1.0 OD2 B:ASP181 3.8 18.8 1.0 CG B:GLU188 4.2 18.1 1.0 CG B:ASP185 4.2 23.1 1.0 C B:PRO184 4.2 19.8 1.0 O B:PRO223 4.2 17.8 1.0 CG2 B:ILE183 4.3 18.3 1.0 OD2 B:ASP177 4.3 25.3 1.0 OE1 B:GLU188 4.4 18.1 1.0 N B:ASP185 4.4 23.1 1.0 CA B:CA802 4.4 15.6 1.0 O B:PRO184 4.4 19.8 1.0 CA B:PRO184 4.5 19.8 1.0 N B:ILE183 4.5 18.3 1.0 CA B:PRO223 4.5 17.8 1.0 N B:PRO184 4.5 19.8 1.0 CB B:ASP179 4.5 21.3 1.0 N B:ASP179 4.6 21.3 1.0 CA B:ASP177 4.6 25.3 1.0 CA B:ILE183 4.6 18.3 1.0 N B:ARG178 4.6 23.9 1.0 CB B:ASP177 4.7 25.3 1.0 CA B:ASP185 4.7 23.1 1.0 C B:PRO223 4.8 17.8 1.0 N B:ASP181 4.8 18.8 1.0 C B:ASP177 4.9 25.3 1.0 OD2 B:ASP185 4.9 23.1 1.0 CB B:ASP181 4.9 18.8 1.0 CB B:ILE183 5.0 18.3 1.0 CB B:GLU188 5.0 18.1 1.0

Calcium binding site 4 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca802 b:15.6 occ:1.00 O B:SER222 2.5 16.6 1.0 OD2 B:ASP181 2.5 18.8 1.0 O B:LYS225 2.5 17.5 1.0 OD2 B:ASP235 2.5 13.4 1.0 OD2 B:ASP179 2.5 21.3 1.0 OE1 B:GLU188 2.5 18.1 1.0 OE2 B:GLU188 2.9 18.1 1.0 CD B:GLU188 3.1 18.1 1.0 CG B:ASP181 3.5 18.8 1.0 C B:SER222 3.6 16.6 1.0 CG B:ASP235 3.7 13.4 1.0 C B:LYS225 3.7 17.5 1.0 CG B:ASP179 3.8 21.3 1.0 OD1 B:ASP181 4.1 18.8 1.0 N B:SER222 4.3 16.6 1.0 CA B:CA801 4.4 22.5 1.0 OG1 B:THR228 4.4 13.4 1.0 CB B:ASP235 4.4 13.4 1.0 CA B:PRO223 4.4 17.8 1.0 N B:PRO223 4.5 17.8 1.0 CA B:SER222 4.5 16.6 1.0 CG B:GLU188 4.5 18.1 1.0 N B:LYS225 4.6 17.5 1.0 OD1 B:ASP179 4.6 21.3 1.0 CB B:ASP181 4.6 18.8 1.0 CA B:TRP226 4.6 15.1 1.0 CB B:SER221 4.6 17.4 1.0 N B:TRP226 4.6 15.1 1.0 C B:TRP226 4.6 15.1 1.0 OD1 B:ASP235 4.7 13.4 1.0 CB B:ASP179 4.7 21.3 1.0 O B:TRP226 4.7 15.1 1.0 CA B:LYS225 4.7 17.5 1.0 C B:PRO223 4.7 17.8 1.0 CB B:SER222 5.0 16.6 1.0

Calcium binding site 5 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca801 b:23.7 occ:1.00 OE2 C:GLU188 2.4 18.8 1.0 OD1 C:ASP179 2.4 22.9 1.0 OD1 C:ASP177 2.5 26.9 1.0 O C:ILE183 2.5 26.9 1.0 OD1 C:ASP181 2.5 23.9 1.0 CG C:ASP179 3.2 22.9 1.0 OD2 C:ASP179 3.3 22.9 1.0 OD1 C:ASP185 3.5 23.2 1.0 CD C:GLU188 3.5 18.8 1.0 CG C:ASP181 3.6 23.9 1.0 CG C:ASP177 3.7 26.9 1.0 C C:ILE183 3.7 26.9 1.0 OD2 C:ASP181 3.9 23.9 1.0 C C:PRO184 4.0 24.2 1.0 CG C:GLU188 4.1 18.8 1.0 O C:PRO184 4.1 24.2 1.0 O C:PRO223 4.2 15.4 1.0 N C:ASP185 4.3 23.2 1.0 CA C:PRO184 4.3 24.2 1.0 OD2 C:ASP177 4.3 26.9 1.0 CG1 C:ILE183 4.4 26.9 1.0 N C:PRO184 4.4 24.2 1.0 CA C:ASP185 4.5 23.2 1.0 CG C:ASP185 4.6 23.2 1.0 CA C:CA802 4.6 13.9 1.0 N C:ASP179 4.6 22.9 1.0 OE1 C:GLU188 4.6 18.8 1.0 CA C:ASP177 4.6 26.9 1.0 N C:ARG178 4.6 27.9 1.0 N C:ILE183 4.6 26.9 1.0 CA C:ILE183 4.7 26.9 1.0 CB C:ASP179 4.7 22.9 1.0 CB C:ASP177 4.7 26.9 1.0 CA C:PRO223 4.7 15.4 1.0 N C:ASP181 4.8 23.9 1.0 C C:PRO223 4.8 15.4 1.0 CB C:ASP181 4.9 23.9 1.0 C C:ASP177 4.9 26.9 1.0

Calcium binding site 6 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca802 b:13.9 occ:1.00 OD2 C:ASP181 2.5 23.9 1.0 O C:SER222 2.5 15.0 1.0 OD2 C:ASP235 2.5 13.3 1.0 OD2 C:ASP179 2.5 22.9 1.0 O C:LYS225 2.5 16.2 1.0 OE1 C:GLU188 2.6 18.8 1.0 OE2 C:GLU188 2.8 18.8 1.0 CD C:GLU188 3.1 18.8 1.0 CG C:ASP181 3.5 23.9 1.0 CG C:ASP235 3.7 13.3 1.0 C C:SER222 3.7 15.0 1.0 CG C:ASP179 3.7 22.9 1.0 C C:LYS225 3.8 16.2 1.0 OD1 C:ASP181 4.0 23.9 1.0 N C:SER222 4.3 15.0 1.0 OG1 C:THR228 4.3 12.8 1.0 CB C:ASP235 4.4 13.3 1.0 N C:LYS225 4.4 16.2 1.0 CB C:ASP181 4.5 23.9 1.0 CA C:SER222 4.5 15.0 1.0 OD1 C:ASP179 4.5 22.9 1.0 CG C:GLU188 4.6 18.8 1.0 CA C:PRO223 4.6 15.4 1.0 OD1 C:ASP235 4.6 13.3 1.0 N C:PRO223 4.6 15.4 1.0 CA C:CA801 4.6 23.7 1.0 O C:TRP226 4.6 16.8 1.0 CB C:SER221 4.6 14.9 1.0 CA C:LYS225 4.6 16.2 1.0 CB C:ASP179 4.7 22.9 1.0 C C:TRP226 4.7 16.8 1.0 N C:TRP226 4.7 16.8 1.0 CA C:TRP226 4.7 16.8 1.0 C C:PRO223 4.7 15.4 1.0 CB C:SER222 4.9 15.0 1.0 N C:GLU224 4.9 21.8 1.0

Calcium binding site 7 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca801 b:34.2 occ:1.00 OD1 D:ASP179 2.4 29.4 1.0 O D:ILE183 2.4 27.8 1.0 OE2 D:GLU188 2.5 25.6 1.0 OD1 D:ASP181 2.5 26.3 1.0 OD1 D:ASP177 2.6 34.1 1.0 OD2 D:ASP179 2.6 29.4 1.0 CG D:ASP179 2.9 29.4 1.0 CG D:ASP181 3.4 26.3 1.0 CD D:GLU188 3.5 25.6 1.0 OD1 D:ASP185 3.6 30.9 1.0 C D:ILE183 3.6 27.8 1.0 OD2 D:ASP181 3.7 26.3 1.0 CG D:ASP177 3.8 34.1 1.0 CG2 D:ILE183 3.9 27.8 1.0 CA D:CA802 4.2 24.1 1.0 OE1 D:GLU188 4.2 25.6 1.0 CG D:GLU188 4.3 25.6 1.0 N D:ILE183 4.3 27.8 1.0 CB D:ASP179 4.4 29.4 1.0 CA D:ILE183 4.4 27.8 1.0 OD2 D:ASP177 4.4 34.1 1.0 C D:PRO184 4.5 28.6 1.0 O D:PRO223 4.5 24.4 1.0 N D:PRO184 4.6 28.6 1.0 O D:PRO184 4.6 28.6 1.0 CA D:PRO184 4.7 28.6 1.0 N D:ASP179 4.7 29.4 1.0 N D:ASP181 4.7 26.3 1.0 CB D:ILE183 4.7 27.8 1.0 CA D:PRO223 4.7 24.4 1.0 N D:ASP185 4.8 30.9 1.0 CB D:ASP181 4.8 26.3 1.0 CA D:ASP177 4.8 34.1 1.0 CG D:ASP185 4.8 30.9 1.0 C D:PRO223 4.9 24.4 1.0 CB D:ASP177 4.9 34.1 1.0 N D:ARG178 4.9 35.9 1.0

Calcium binding site 8 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca802 b:24.1 occ:1.00 OD2 D:ASP179 2.5 29.4 1.0 OD2 D:ASP235 2.5 16.9 1.0 OE1 D:GLU188 2.5 25.6 1.0 O D:LYS225 2.5 22.8 1.0 O D:SER222 2.6 23.1 1.0 OD2 D:ASP181 2.8 26.3 1.0 OE2 D:GLU188 3.0 25.6 1.0 CD D:GLU188 3.1 25.6 1.0 CG D:ASP235 3.6 16.9 1.0 CG D:ASP179 3.7 29.4 1.0 C D:LYS225 3.7 22.8 1.0 CG D:ASP181 3.8 26.3 1.0 C D:SER222 3.8 23.1 1.0 CA D:CA801 4.2 34.2 1.0 OG1 D:THR228 4.2 18.0 1.0 OD1 D:ASP181 4.3 26.3 1.0 CB D:ASP179 4.3 29.4 1.0 CB D:ASP235 4.4 16.9 1.0 OG D:SER222 4.4 23.1 1.0 C D:TRP226 4.5 20.9 1.0 O D:TRP226 4.5 20.9 1.0 CA D:TRP226 4.5 20.9 1.0 OD1 D:ASP235 4.5 16.9 1.0 N D:SER222 4.5 23.1 1.0 CA D:PRO223 4.6 24.4 1.0 N D:LYS225 4.6 22.8 1.0 N D:TRP226 4.6 20.9 1.0 CG D:GLU188 4.6 25.6 1.0 OD1 D:ASP179 4.6 29.4 1.0 N D:PRO223 4.7 24.4 1.0 CB D:SER221 4.7 22.4 1.0 CA D:LYS225 4.7 22.8 1.0 CA D:SER222 4.7 23.1 1.0 C D:PRO223 4.7 24.4 1.0 N D:GLU224 4.7 29.5 1.0 CB D:ASP181 4.8 26.3 1.0 N D:SER227 5.0 19.9 1.0

Calcium binding site 9 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca801 b:44.4 occ:1.00 OD1 E:ASP179 2.5 35.5 1.0 OE2 E:GLU188 2.5 36.0 1.0 O E:ILE183 2.5 35.4 1.0 OD1 E:ASP177 2.5 42.9 1.0 OD1 E:ASP185 2.8 42.6 1.0 CG E:ASP179 3.2 35.5 1.0 OD2 E:ASP179 3.3 35.5 1.0 OD1 E:ASP181 3.5 34.1 1.0 CD E:GLU188 3.6 36.0 1.0 CG E:ASP177 3.7 42.9 1.0 C E:ILE183 3.7 35.4 1.0 O E:PRO223 3.8 33.1 1.0 C E:PRO184 3.9 39.2 1.0 N E:ASP185 3.9 42.6 1.0 CG E:ASP185 4.0 42.6 1.0 N E:ARG178 4.1 41.7 1.0 CA E:ASP177 4.2 42.9 1.0 CG E:GLU188 4.2 36.0 1.0 CA E:PRO184 4.2 39.2 1.0 CA E:ASP185 4.3 42.6 1.0 O E:PRO184 4.3 39.2 1.0 CA E:PRO223 4.3 33.1 1.0 N E:ASP179 4.3 35.5 1.0 CG E:ASP181 4.3 34.1 1.0 CB E:ASP177 4.3 42.9 1.0 OD2 E:ASP181 4.3 34.1 1.0 N E:PRO184 4.4 39.2 1.0 C E:ASP177 4.5 42.9 1.0 C E:PRO223 4.5 33.1 1.0 OE1 E:GLU188 4.5 36.0 1.0 CB E:ASP179 4.6 35.5 1.0 CG2 E:ILE183 4.7 35.4 1.0 OD2 E:ASP177 4.7 42.9 1.0 CB E:ASP185 4.7 42.6 1.0 CB E:PRO223 4.8 33.1 1.0 CA E:ILE183 4.8 35.4 1.0 N E:ILE183 4.9 35.4 1.0 OD2 E:ASP185 4.9 42.6 1.0 CB E:GLU188 5.0 36.0 1.0 CA E:CA802 5.0 33.4 1.0

Calcium binding site 10 out of 14 in the Anthrax Toxin Protective Antigen Channels Bound to Edema Factor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Anthrax Toxin Protective Antigen Channels Bound to Edema Factor within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca802 b:33.4 occ:1.00 OD2 E:ASP235 2.5 25.9 1.0 OD2 E:ASP179 2.5 35.5 1.0 OE1 E:GLU188 2.5 36.0 1.0 O E:LYS225 2.5 28.1 1.0 OD2 E:ASP181 2.5 34.1 1.0 O E:SER222 3.0 32.1 1.0 OE2 E:GLU188 3.2 36.0 1.0 CD E:GLU188 3.2 36.0 1.0 CG E:ASP235 3.3 25.9 1.0 CB E:ASP235 3.6 25.9 1.0 CG E:ASP179 3.6 35.5 1.0 CG E:ASP181 3.7 34.1 1.0 C E:LYS225 3.7 28.1 1.0 C E:SER222 4.2 32.1 1.0 OG1 E:THR228 4.3 23.6 1.0 OD1 E:ASP235 4.3 25.9 1.0 C E:TRP226 4.4 27.6 1.0 CA E:TRP226 4.4 27.6 1.0 O E:TRP226 4.4 27.6 1.0 OD1 E:ASP181 4.4 34.1 1.0 CB E:ASP179 4.5 35.5 1.0 OD1 E:ASP179 4.5 35.5 1.0 N E:TRP226 4.5 27.6 1.0 CB E:ASP181 4.6 34.1 1.0 CG E:GLU188 4.7 36.0 1.0 CB E:SER221 4.7 33.1 1.0 N E:SER222 4.7 32.1 1.0 N E:LYS225 4.7 28.1 1.0 OG E:SER222 4.8 32.1 1.0 CA E:LYS225 4.8 28.1 1.0 N E:SER227 4.8 24.2 1.0 CA E:ASP235 5.0 25.9 1.0 CA E:PRO223 5.0 33.1 1.0 CA E:CA801 5.0 44.4 1.0

N.J.Hardenbrook, S.Liu, K.Zhou, K.Ghosal, Z.Hong Zhou, B.A.Krantz. Atomic Structures of Anthrax Toxin Protective Antigen Channels Bound to Partially Unfolded Lethal and Edema Factors. Nat Commun V. 11 840 2020.
ISSN: ESSN 2041-1723
PubMed: 32047164
DOI: 10.1038/S41467-020-14658-6