Calcium in PDB 6vbu: Structure of the Bovine Bbsome Complex

The binding sites of Calcium atom in the Structure of the Bovine Bbsome Complex (pdb code 6vbu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the Bovine Bbsome Complex, PDB code: 6vbu:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of the Bovine Bbsome Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Bovine Bbsome Complex within 5.0Å range: probe atom residue distance (Å) B Occ 2:Ca800 b:73.1 occ:1.00 OD1 2:ASN253 2.4 70.0 1.0 OE2 2:GLU259 2.5 66.5 1.0 OD2 2:ASP251 2.6 69.9 1.0 O 2:VAL257 2.7 75.2 1.0 CB 2:ASP255 2.9 76.3 1.0 OD2 2:ASP255 3.0 76.3 1.0 CG 2:ASP255 3.2 76.3 1.0 CG 2:ASN253 3.3 70.0 1.0 N 2:ASP255 3.4 76.3 1.0 CD 2:GLU259 3.5 66.5 1.0 CG 2:ASP251 3.6 69.9 1.0 CA 2:ASP255 3.7 76.3 1.0 ND2 2:ASN253 3.7 70.0 1.0 OE1 2:GLU259 3.8 66.5 1.0 C 2:VAL257 3.9 75.2 1.0 OD1 2:ASP251 4.0 69.9 1.0 N 2:ASN253 4.1 70.0 1.0 N 2:SER254 4.2 70.7 1.0 OD1 2:ASP255 4.3 76.3 1.0 C 2:ASN253 4.4 70.0 1.0 C 2:ASP255 4.4 76.3 1.0 C 2:SER254 4.4 70.7 1.0 CB 2:ASN253 4.4 70.0 1.0 N 2:VAL257 4.5 75.2 1.0 CA 2:ASN253 4.5 70.0 1.0 N 2:LEU252 4.5 66.6 1.0 N 2:GLY256 4.5 76.6 1.0 CA 2:VAL257 4.6 75.2 1.0 CB 2:VAL257 4.7 75.2 1.0 CB 2:ASP251 4.8 69.9 1.0 CA 2:SER254 4.8 70.7 1.0 CG 2:GLU259 4.8 66.5 1.0 CA 2:ASP251 4.8 69.9 1.0 N 2:CYS258 4.9 72.1 1.0 O 2:ASN253 5.0 70.0 1.0

Calcium binding site 2 out of 2 in the Structure of the Bovine Bbsome Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Bovine Bbsome Complex within 5.0Å range: probe atom residue distance (Å) B Occ 2:Ca801 b:74.9 occ:1.00 OE2 2:GLU178 2.1 68.1 1.0 O 2:LYS176 2.2 79.3 1.0 OD1 2:ASP170 2.5 74.4 1.0 CD 2:GLU178 2.8 68.1 1.0 OE1 2:GLU178 3.0 68.1 1.0 O 2:GLY173 3.0 80.2 1.0 OD2 2:ASP174 3.2 85.6 1.0 C 2:LYS176 3.3 79.3 1.0 O 2:PHE171 3.4 72.7 1.0 CB 2:ASP174 3.6 85.6 1.0 CG 2:ASP170 3.7 74.4 1.0 N 2:LYS176 3.8 79.3 1.0 OD1 2:ASP172 3.9 79.9 1.0 CG 2:ASP174 3.9 85.6 1.0 CA 2:LYS176 3.9 79.3 1.0 C 2:GLY173 4.1 80.2 1.0 CB 2:LYS176 4.2 79.3 1.0 CG 2:GLU178 4.3 68.1 1.0 C 2:ASP174 4.4 85.6 1.0 N 2:LYS177 4.4 69.9 1.0 OD2 2:ASP170 4.4 74.4 1.0 CA 2:ASP174 4.4 85.6 1.0 N 2:GLY175 4.5 82.4 1.0 C 2:PHE171 4.6 72.7 1.0 N 2:PHE171 4.7 72.7 1.0 CA 2:LYS177 4.7 69.9 1.0 N 2:GLU178 4.7 68.1 1.0 N 2:ASP174 4.7 85.6 1.0 CA 2:ASP170 4.8 74.4 1.0 C 2:GLY175 4.8 82.4 1.0 CB 2:ASP170 4.8 74.4 1.0 C 2:LYS177 4.8 69.9 1.0 CG 2:ASP172 4.9 79.9 1.0 O 2:ASP174 4.9 85.6 1.0 C 2:ASP170 4.9 74.4 1.0

S.K.Singh, M.Gui, F.Koh, M.C.Yip, A.Brown. Structure and Activation Mechanism of the Bbsome Membrane Protein Trafficking Complex. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 31939736
DOI: 10.7554/ELIFE.53322