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Calcium in PDB 6vx7: Bestrophin-2 CA2+-Bound State (5 Mm CA2+)

Other elements in 6vx7:

The structure of Bestrophin-2 CA2+-Bound State (5 Mm CA2+) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Bestrophin-2 CA2+-Bound State (5 Mm CA2+) (pdb code 6vx7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Bestrophin-2 CA2+-Bound State (5 Mm CA2+), PDB code: 6vx7:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 6vx7

Go back to Calcium Binding Sites List in 6vx7
Calcium binding site 1 out of 5 in the Bestrophin-2 CA2+-Bound State (5 Mm CA2+)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Bestrophin-2 CA2+-Bound State (5 Mm CA2+) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca501

b:1.6
occ:1.00
O C:ASN296 2.4 1.6 1.0
OD2 C:ASP301 2.5 4.3 1.0
O C:GLN293 2.5 2.8 1.0
O B:ALA10 2.5 2.6 1.0
OD2 C:ASP304 2.6 2.6 1.0
O B:HOH602 2.7 50.0 1.0
OD1 C:ASP304 2.8 2.6 1.0
CG C:ASP304 3.1 2.6 1.0
CG C:ASP301 3.4 4.3 1.0
C C:GLN293 3.5 2.8 1.0
C C:ASN296 3.6 1.6 1.0
C B:ALA10 3.6 2.6 1.0
CB C:ASP301 3.8 4.3 1.0
CA C:GLN293 4.0 2.8 1.0
O C:HOH601 4.2 2.7 1.0
O B:VAL9 4.3 3.0 1.0
O C:GLU292 4.3 2.6 1.0
CA B:LYS11 4.3 5.3 1.0
N B:LYS11 4.4 5.3 1.0
CA C:PRO297 4.4 1.4 1.0
OD1 C:ASP301 4.4 4.3 1.0
N C:PRO297 4.4 1.4 1.0
CA C:ASN296 4.5 1.6 1.0
N C:GLY299 4.5 2.4 1.0
N C:ASN296 4.5 1.6 1.0
CA B:ALA10 4.6 2.6 1.0
CB C:ASP304 4.6 2.6 1.0
N C:LEU294 4.6 2.6 1.0
N B:ALA12 4.6 5.3 1.0
CB C:ASN296 4.7 1.6 1.0
CG C:GLN293 4.7 2.8 1.0
N C:ASP301 4.7 4.3 1.0
CA C:GLY299 4.8 2.4 1.0
C B:LYS11 4.8 5.3 1.0
C C:PRO297 4.8 1.4 1.0
CA C:ASP301 4.9 4.3 1.0
N C:PHE298 5.0 1.4 1.0
CB C:GLN293 5.0 2.8 1.0
CA C:LEU294 5.0 2.6 1.0

Calcium binding site 2 out of 5 in 6vx7

Go back to Calcium Binding Sites List in 6vx7
Calcium binding site 2 out of 5 in the Bestrophin-2 CA2+-Bound State (5 Mm CA2+)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Bestrophin-2 CA2+-Bound State (5 Mm CA2+) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:1.9
occ:1.00
O A:ASN296 2.4 1.6 1.0
OD2 A:ASP301 2.5 4.3 1.0
O A:GLN293 2.6 2.8 1.0
OD2 A:ASP304 2.6 2.6 1.0
O E:ALA10 2.6 2.6 1.0
O E:HOH602 2.8 50.0 1.0
OD1 A:ASP304 2.8 2.6 1.0
CG A:ASP304 3.1 2.6 1.0
CG A:ASP301 3.4 4.3 1.0
C A:GLN293 3.6 2.8 1.0
C A:ASN296 3.6 1.6 1.0
C E:ALA10 3.7 2.6 1.0
CB A:ASP301 3.8 4.3 1.0
CA A:GLN293 4.1 2.8 1.0
O A:HOH601 4.3 2.7 1.0
O A:GLU292 4.3 2.6 1.0
O E:VAL9 4.4 3.0 1.0
OD1 A:ASP301 4.4 4.3 1.0
CA A:PRO297 4.4 1.4 1.0
CA E:LYS11 4.4 5.3 1.0
N A:PRO297 4.5 1.4 1.0
N A:GLY299 4.5 2.4 1.0
N E:LYS11 4.5 5.3 1.0
CA A:ASN296 4.5 1.6 1.0
N A:ASN296 4.6 1.6 1.0
CB A:ASP304 4.6 2.6 1.0
CB A:ASN296 4.7 1.6 1.0
CA E:ALA10 4.7 2.6 1.0
N A:LEU294 4.7 2.6 1.0
N E:ALA12 4.7 5.3 1.0
N A:ASP301 4.7 4.3 1.0
CG A:GLN293 4.7 2.8 1.0
CA A:GLY299 4.7 2.4 1.0
C A:PRO297 4.8 1.4 1.0
CA A:ASP301 4.9 4.3 1.0
C E:LYS11 4.9 5.3 1.0
N A:PHE298 5.0 1.4 1.0

Calcium binding site 3 out of 5 in 6vx7

Go back to Calcium Binding Sites List in 6vx7
Calcium binding site 3 out of 5 in the Bestrophin-2 CA2+-Bound State (5 Mm CA2+)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Bestrophin-2 CA2+-Bound State (5 Mm CA2+) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:2.6
occ:1.00
O B:ASN296 2.4 1.6 1.0
O A:ALA10 2.4 2.6 1.0
O B:GLN293 2.5 2.8 1.0
OD2 B:ASP301 2.5 4.3 1.0
OD2 B:ASP304 2.6 2.6 1.0
O A:HOH602 2.8 50.0 1.0
OD1 B:ASP304 2.8 2.6 1.0
CG B:ASP304 3.1 2.6 1.0
CG B:ASP301 3.4 4.3 1.0
C B:GLN293 3.5 2.8 1.0
C A:ALA10 3.6 2.6 1.0
C B:ASN296 3.6 1.6 1.0
CB B:ASP301 3.8 4.3 1.0
CA B:GLN293 4.0 2.8 1.0
O B:HOH601 4.2 2.7 1.0
O A:VAL9 4.3 3.0 1.0
O B:GLU292 4.3 2.6 1.0
CA A:LYS11 4.3 5.3 1.0
N A:LYS11 4.3 5.3 1.0
CA B:PRO297 4.4 1.4 1.0
OD1 B:ASP301 4.4 4.3 1.0
N B:PRO297 4.4 1.4 1.0
CA B:ASN296 4.5 1.6 1.0
CA A:ALA10 4.5 2.6 1.0
N B:GLY299 4.5 2.4 1.0
N B:ASN296 4.5 1.6 1.0
CB B:ASP304 4.6 2.6 1.0
N B:LEU294 4.6 2.6 1.0
CG B:GLN293 4.6 2.8 1.0
N A:ALA12 4.6 5.3 1.0
CB B:ASN296 4.7 1.6 1.0
N B:ASP301 4.7 4.3 1.0
CA B:GLY299 4.8 2.4 1.0
C B:PRO297 4.8 1.4 1.0
C A:LYS11 4.9 5.3 1.0
CA B:ASP301 4.9 4.3 1.0
CB B:GLN293 4.9 2.8 1.0
N B:PHE298 5.0 1.4 1.0
CA B:LEU294 5.0 2.6 1.0

Calcium binding site 4 out of 5 in 6vx7

Go back to Calcium Binding Sites List in 6vx7
Calcium binding site 4 out of 5 in the Bestrophin-2 CA2+-Bound State (5 Mm CA2+)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Bestrophin-2 CA2+-Bound State (5 Mm CA2+) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca501

b:1.9
occ:1.00
O E:ASN296 2.4 1.6 1.0
OD2 E:ASP301 2.5 4.3 1.0
O E:GLN293 2.5 2.8 1.0
O D:ALA10 2.5 2.6 1.0
OD2 E:ASP304 2.6 2.6 1.0
O D:HOH602 2.7 50.0 1.0
OD1 E:ASP304 2.8 2.6 1.0
CG E:ASP304 3.1 2.6 1.0
CG E:ASP301 3.4 4.3 1.0
C E:GLN293 3.6 2.8 1.0
C E:ASN296 3.6 1.6 1.0
C D:ALA10 3.6 2.6 1.0
CB E:ASP301 3.9 4.3 1.0
CA E:GLN293 4.1 2.8 1.0
O E:HOH601 4.3 2.7 1.0
O D:VAL9 4.3 3.0 1.0
O E:GLU292 4.3 2.6 1.0
CA D:LYS11 4.4 5.3 1.0
CA E:PRO297 4.4 1.4 1.0
N D:LYS11 4.4 5.3 1.0
OD1 E:ASP301 4.4 4.3 1.0
N E:PRO297 4.4 1.4 1.0
N E:GLY299 4.5 2.4 1.0
CA E:ASN296 4.5 1.6 1.0
N E:ASN296 4.5 1.6 1.0
CA D:ALA10 4.6 2.6 1.0
CB E:ASP304 4.6 2.6 1.0
N D:ALA12 4.6 5.3 1.0
N E:LEU294 4.6 2.6 1.0
CB E:ASN296 4.6 1.6 1.0
CG E:GLN293 4.7 2.8 1.0
N E:ASP301 4.7 4.3 1.0
CA E:GLY299 4.7 2.4 1.0
C D:LYS11 4.8 5.3 1.0
C E:PRO297 4.8 1.4 1.0
CA E:ASP301 4.9 4.3 1.0
N E:PHE298 5.0 1.4 1.0

Calcium binding site 5 out of 5 in 6vx7

Go back to Calcium Binding Sites List in 6vx7
Calcium binding site 5 out of 5 in the Bestrophin-2 CA2+-Bound State (5 Mm CA2+)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Bestrophin-2 CA2+-Bound State (5 Mm CA2+) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca501

b:1.8
occ:1.00
O D:ASN296 2.4 1.6 1.0
OD2 D:ASP301 2.5 4.3 1.0
O C:ALA10 2.5 2.6 1.0
O D:GLN293 2.5 2.8 1.0
OD2 D:ASP304 2.6 2.6 1.0
O C:HOH602 2.7 50.0 1.0
OD1 D:ASP304 2.9 2.6 1.0
CG D:ASP304 3.1 2.6 1.0
CG D:ASP301 3.4 4.3 1.0
C D:GLN293 3.5 2.8 1.0
C D:ASN296 3.6 1.6 1.0
C C:ALA10 3.6 2.6 1.0
CB D:ASP301 3.9 4.3 1.0
CA D:GLN293 4.1 2.8 1.0
O D:HOH601 4.3 2.7 1.0
O D:GLU292 4.3 2.6 1.0
O C:VAL9 4.3 3.0 1.0
CA C:LYS11 4.4 5.3 1.0
N C:LYS11 4.4 5.3 1.0
OD1 D:ASP301 4.4 4.3 1.0
CA D:PRO297 4.4 1.4 1.0
N D:PRO297 4.5 1.4 1.0
CA D:ASN296 4.5 1.6 1.0
N D:GLY299 4.5 2.4 1.0
N D:ASN296 4.5 1.6 1.0
CA C:ALA10 4.6 2.6 1.0
CB D:ASP304 4.6 2.6 1.0
CB D:ASN296 4.6 1.6 1.0
N D:LEU294 4.6 2.6 1.0
N C:ALA12 4.6 5.3 1.0
CG D:GLN293 4.7 2.8 1.0
N D:ASP301 4.7 4.3 1.0
CA D:GLY299 4.8 2.4 1.0
C D:PRO297 4.9 1.4 1.0
C C:LYS11 4.9 5.3 1.0
CA D:ASP301 4.9 4.3 1.0
N D:PHE298 5.0 1.4 1.0

Reference:

A.P.Owji, Q.Zhao, C.Ji, A.Kittredge, A.Hopiavuori, Z.Fu, N.Ward, O.Clarke, Y.Shen, Y.Zhang, W.A.Hendrickson, T.Yang. Structural and Functional Characterization of the Bestrophin-2 Anion Channel Nat.Struct.Mol.Biol. 2020.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-020-0402-Z
Page generated: Tue Jul 16 17:16:18 2024

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