Atomistry » Calcium » PDB 6wni-6x6q » 6wyh
Atomistry »
  Calcium »
    PDB 6wni-6x6q »
      6wyh »

Calcium in PDB 6wyh: Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution

Enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution

All present enzymatic activity of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution:
1.16.3.1;

Protein crystallography data

The structure of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution, PDB code: 6wyh was solved by J.B.Bailey, L.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 97.27 / 2.22
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 128.880, 128.880, 291.810, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 24.5

Other elements in 6wyh:

The structure of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution also contains other interesting chemical elements:

Iron (Fe) 10 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution (pdb code 6wyh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution, PDB code: 6wyh:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 6wyh

Go back to Calcium Binding Sites List in 6wyh
Calcium binding site 1 out of 7 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca203

b:38.3
occ:1.00
 OD2 B:ASP84 2.3 31.4 1.0
CG B:ASP84 3.1 29.7 1.0
OD1 B:ASP84 3.1 29.3 1.0
O B:HOH372 4.3 30.9 1.0
O B:HOH379 4.3 34.8 1.0
CB B:ASP84 4.5 29.4 1.0

Calcium binding site 2 out of 7 in 6wyh

Go back to Calcium Binding Sites List in 6wyh
Calcium binding site 2 out of 7 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca204

b:70.1
occ:1.00
 O B:HOH460 2.4 50.5 1.0
O B:HOH323 2.6 21.4 1.0
O B:HOH453 4.0 40.4 1.0
CA B:CA205 4.2 69.8 1.0
O B:ASP89 4.3 27.2 1.0
OD1 B:ASP89 4.5 51.5 1.0
CA B:ASP89 4.8 30.2 1.0
C B:ASP89 4.9 28.2 1.0

Calcium binding site 3 out of 7 in 6wyh

Go back to Calcium Binding Sites List in 6wyh
Calcium binding site 3 out of 7 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca205

b:69.8
occ:1.00
 O B:HOH323 2.4 21.4 1.0
O B:HOH486 3.1 30.5 1.0
O B:ASP89 3.9 27.2 1.0
OE2 B:GLU90 4.0 34.4 1.0
O B:HOH453 4.1 40.4 1.0
CA B:CA204 4.2 70.1 1.0
OE1 B:GLU90 4.2 34.3 1.0
CD B:GLU90 4.4 31.6 1.0

Calcium binding site 4 out of 7 in 6wyh

Go back to Calcium Binding Sites List in 6wyh
Calcium binding site 4 out of 7 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca203

b:63.4
occ:1.00
 OE2 C:GLU134 2.8 38.6 1.0
OD1 C:ASP131 2.8 38.6 1.0
CA C:CA204 3.2 82.4 1.0
CD C:GLU134 4.0 37.8 1.0
CG C:ASP131 4.0 37.4 1.0
O C:HOH301 4.3 38.4 1.0
OE1 C:GLU134 4.6 39.2 1.0
CB C:ASP131 4.7 31.4 1.0
CB C:GLU134 4.9 33.0 1.0
OD2 C:ASP131 5.0 39.8 1.0
CA C:ASP131 5.0 29.2 1.0

Calcium binding site 5 out of 7 in 6wyh

Go back to Calcium Binding Sites List in 6wyh
Calcium binding site 5 out of 7 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca204

b:82.4
occ:1.00
 O C:HOH301 2.4 38.4 1.0
CA C:CA203 3.2 63.4 1.0
OE2 C:GLU134 3.6 38.6 1.0
OE1 C:GLU134 3.9 39.2 1.0
CD C:GLU134 4.2 37.8 1.0
O C:HOH335 4.5 39.2 1.0
OD1 C:ASP131 5.0 38.6 1.0

Calcium binding site 6 out of 7 in 6wyh

Go back to Calcium Binding Sites List in 6wyh
Calcium binding site 6 out of 7 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca203

b:80.6
occ:0.33
 CA D:CA204 2.6 88.6 0.3
O D:HOH322 2.6 47.6 1.0
OD1 D:ASP131 2.6 52.7 1.0
OE2 D:GLU134 3.2 46.8 1.0
CG D:ASP131 3.9 48.4 1.0
O D:HOH365 3.9 39.4 1.0
CD D:GLU134 4.4 46.2 1.0
OD2 D:ASP131 4.7 52.2 1.0
OG1 D:THR135 4.7 44.0 1.0
CB D:ASP131 4.8 40.3 1.0
CB D:GLU134 4.9 39.7 1.0
O D:HOH311 4.9 31.6 1.0

Calcium binding site 7 out of 7 in 6wyh

Go back to Calcium Binding Sites List in 6wyh
Calcium binding site 7 out of 7 in the Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Human H-Chain Ferritin Variant 157C Delta C-Star Modified with A Raft Agent Soaked in An Acrylate Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca204

b:88.6
occ:0.33
 OE2 D:GLU134 2.3 46.8 1.0
O D:HOH311 2.5 31.6 1.0
CA D:CA203 2.6 80.6 0.3
CD D:GLU134 3.2 46.2 1.0
OE1 D:GLU134 3.4 49.5 1.0
OD1 D:ASP131 3.8 52.7 1.0
O D:HOH337 4.5 34.3 1.0
CG D:GLU134 4.6 42.7 1.0
CG D:ASP131 4.7 48.4 1.0
CB D:ASP131 4.8 40.3 1.0
CA D:ASP131 4.9 37.3 1.0
CB D:GLU134 4.9 39.7 1.0

Reference:

K.Han, J.B.Bailey, L.Zhang, F.A.Tezcan. Anisotropic Dynamics and Mechanics of Macromolecular Crystals Containing Lattice-Patterned Polymer Networks. J.Am.Chem.Soc. V. 142 19402 2020.
ISSN: ESSN 1520-5126
PubMed: 33124805
DOI: 10.1021/JACS.0C10065
Page generated: Wed Jul 9 19:42:25 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy