Calcium in PDB 6y3m: 14-3-3 Sigma in Complex with Phosphorylated Atpase Peptide

The structure of 14-3-3 Sigma in Complex with Phosphorylated Atpase Peptide, PDB code: 6y3m was solved by A.Ballone, R.A.Lau, F.P.A.Zweipfenning, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.42 / 1.50
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	82.254, 112.452, 62.885, 90.00, 90.00, 90.00
R / Rfree (%)	16.3 / 19.7

The structure of 14-3-3 Sigma in Complex with Phosphorylated Atpase Peptide also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Calcium atom in the 14-3-3 Sigma in Complex with Phosphorylated Atpase Peptide (pdb code 6y3m). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the 14-3-3 Sigma in Complex with Phosphorylated Atpase Peptide, PDB code: 6y3m:

Calcium binding site 1 out of 1 in the 14-3-3 Sigma in Complex with Phosphorylated Atpase Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of 14-3-3 Sigma in Complex with Phosphorylated Atpase Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:13.1 occ:0.37 O A:HOH616 2.3 40.7 1.0 O A:HOH807 2.6 45.9 1.0 OE1 A:GLU2 2.7 17.6 1.0 O A:HOH449 2.7 16.1 1.0 O A:HOH714 3.0 30.8 1.0 CD A:GLU2 3.7 17.3 1.0 OE2 A:GLU2 4.0 16.5 1.0 O A:HOH626 4.4 15.6 1.0 O A:HOH824 4.6 15.6 1.0 CG A:GLU2 4.9 12.9 1.0 CA A:GLU2 4.9 11.3 1.0 N A:ARG3 5.0 8.8 1.0

A.Ballone, R.A.Lau, F.P.A.Zweipfenning, C.Ottmann. A New Soaking Procedure For X-Ray Crystallographic Structural Determination of Protein-Peptide Complexes. Acta Crystallogr.,Sect.F V. 76 501 2020.
ISSN: ESSN 2053-230X
PubMed: 33006579
DOI: 10.1107/S2053230X2001122X