Atomistry » Calcium » PDB 6y43-6ycw » 6y8h
Atomistry »
  Calcium »
    PDB 6y43-6ycw »
      6y8h »

Calcium in PDB 6y8h: Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface.

Enzymatic activity of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface.

All present enzymatic activity of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface.:
2.7.11.24;

Protein crystallography data

The structure of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface., PDB code: 6y8h was solved by G.F.De Nicola, C.E.Nichols, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.16 / 1.37
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.864, 102.325, 103.821, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 24

Other elements in 6y8h:

The structure of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface. also contains other interesting chemical elements:

Fluorine (F) 1 atom
Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface. (pdb code 6y8h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface., PDB code: 6y8h:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 6y8h

Go back to Calcium Binding Sites List in 6y8h
Calcium binding site 1 out of 5 in the Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:16.4
occ:1.00
 O A:GLU356 2.4 20.1 1.0
OD1 A:ASP354 2.4 16.9 1.0
OD2 A:ASP354 2.6 16.9 1.0
CG A:ASP354 2.8 17.6 1.0
C A:GLU356 3.5 20.0 1.0
N A:GLU357 4.3 21.7 1.0
CB A:ASP354 4.4 16.2 1.0
N A:GLU356 4.4 17.4 1.0
CA A:GLU356 4.4 19.8 1.0
CA A:GLU357 4.4 23.5 1.0
O A:HOH719 4.6 24.5 1.0
CB A:GLU356 4.6 21.2 1.0

Calcium binding site 2 out of 5 in 6y8h

Go back to Calcium Binding Sites List in 6y8h
Calcium binding site 2 out of 5 in the Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:18.4
occ:1.00
 O A:HOH594 2.4 17.8 1.0
OD2 A:ASP313 2.4 21.5 1.0
O A:HOH643 2.4 24.3 1.0
OE2 A:GLU359 2.5 24.4 1.0
O A:HOH590 2.5 19.3 1.0
CG A:ASP313 3.4 20.7 1.0
CD A:GLU359 3.5 30.1 1.0
CB A:ASP313 3.8 18.6 1.0
OE1 A:GLU359 3.9 33.4 1.0
O A:HOH718 4.4 34.0 1.0
OD2 A:ASP316 4.5 19.9 1.0
OD1 A:ASP313 4.5 21.2 1.0
O A:HOH532 4.6 20.1 1.0
O A:HOH706 4.8 31.1 1.0
CB A:ASP316 4.8 18.6 1.0
CG A:GLU359 4.9 28.9 1.0

Calcium binding site 3 out of 5 in 6y8h

Go back to Calcium Binding Sites List in 6y8h
Calcium binding site 3 out of 5 in the Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca404

b:38.0
occ:1.00
 O A:HOH617 2.4 35.2 1.0
OD1 A:ASP315 2.6 38.5 1.0
CG A:ASP315 3.6 33.4 1.0
O A:HOH718 3.8 34.0 1.0
CB A:ASP315 3.9 28.8 1.0
OD1 A:ASP313 4.5 21.2 1.0
CB A:GLU359 4.5 30.7 1.0
OD2 A:ASP315 4.8 37.9 1.0
OD2 A:ASP313 4.8 21.5 1.0

Calcium binding site 4 out of 5 in 6y8h

Go back to Calcium Binding Sites List in 6y8h
Calcium binding site 4 out of 5 in the Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca405

b:44.1
occ:0.50
 O A:HOH715 2.5 40.0 1.0
O A:HOH660 2.8 37.5 0.5
O A:HOH601 4.3 36.3 1.0
OE2 A:GLU163 4.5 28.4 1.0
OE2 A:GLU356 4.8 29.8 1.0
OE1 A:GLU163 4.9 26.0 1.0
O A:HOH719 5.0 24.5 1.0

Calcium binding site 5 out of 5 in 6y8h

Go back to Calcium Binding Sites List in 6y8h
Calcium binding site 5 out of 5 in the Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non- Canonical Ppi Surface. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca406

b:59.5
occ:1.00
 OE2 A:GLU328 3.5 25.6 1.0
CD A:GLU328 3.9 24.5 1.0
O A:HOH563 4.0 40.7 1.0
NE A:ARG70 4.1 19.4 1.0
OE1 A:GLU328 4.2 23.6 1.0
O A:GLY170 4.5 27.6 1.0
O A:HOH539 4.6 27.3 1.0
CD A:ARG70 4.6 20.5 1.0
CG A:GLU328 4.6 22.0 1.0
O A:LEU171 4.7 49.4 1.0
CZ A:ARG70 4.7 22.2 1.0
O A:HOH671 4.8 29.1 1.0
NH1 A:ARG149 4.8 33.9 1.0
NH2 A:ARG70 4.9 20.6 1.0

Reference:

G.F.De Nicola, C.E.Nichols. Novel P38-Alpha Crystal Lattice with Highly Exposed P38/TAB1 Non-Canonical Ppi Surface. To Be Published.
Page generated: Thu Jul 18 21:48:13 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy