Calcium in PDB 6yns: Cam-P458 Complex (Crystal Form 2)
Protein crystallography data
The structure of Cam-P458 Complex (Crystal Form 2), PDB code: 6yns
was solved by
A.E.Mechaly,
A.Voegele,
A.Haouz,
A.Chenal,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
88.86 /
3.94
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.001,
106.974,
221.635,
90,
90,
90
|
|
R / Rfree (%)
|
22.2 /
28.4
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
29;
Binding sites:
The binding sites of Calcium atom in the Cam-P458 Complex (Crystal Form 2)
(pdb code 6yns). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 29 binding sites of Calcium where determined in the
Cam-P458 Complex (Crystal Form 2), PDB code: 6yns:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 1 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:43.6
occ:1.00
|
OD1
|
A:ASP95
|
2.1
|
110.1
|
1.0
|
|
O
|
A:TYR99
|
2.3
|
66.4
|
1.0
|
|
OD1
|
A:ASN97
|
2.4
|
67.4
|
1.0
|
|
OE1
|
A:GLU104
|
2.4
|
65.4
|
1.0
|
|
OE2
|
A:GLU104
|
2.4
|
85.5
|
1.0
|
|
CD
|
A:GLU104
|
2.7
|
75.6
|
1.0
|
|
OD1
|
A:ASP93
|
2.7
|
86.9
|
1.0
|
|
CG
|
A:ASP95
|
3.1
|
102.5
|
1.0
|
|
CG
|
A:ASN97
|
3.1
|
65.8
|
1.0
|
|
OD2
|
A:ASP95
|
3.4
|
102.0
|
1.0
|
|
ND2
|
A:ASN97
|
3.5
|
64.1
|
1.0
|
|
C
|
A:TYR99
|
3.5
|
69.0
|
1.0
|
|
CG
|
A:ASP93
|
3.9
|
78.3
|
1.0
|
|
CG
|
A:GLU104
|
4.1
|
70.4
|
1.0
|
|
N
|
A:ASP95
|
4.2
|
88.4
|
1.0
|
|
N
|
A:TYR99
|
4.3
|
73.6
|
1.0
|
|
N
|
A:SER101
|
4.3
|
92.9
|
1.0
|
|
CB
|
A:ASP95
|
4.3
|
99.4
|
1.0
|
|
CB
|
A:ASN97
|
4.4
|
65.8
|
1.0
|
|
CA
|
A:TYR99
|
4.4
|
66.2
|
1.0
|
|
N
|
A:ASN97
|
4.5
|
62.2
|
1.0
|
|
N
|
A:ILE100
|
4.5
|
71.3
|
1.0
|
|
CA
|
A:ILE100
|
4.5
|
73.2
|
1.0
|
|
CA
|
A:ASP93
|
4.6
|
62.5
|
1.0
|
|
N
|
A:LYS94
|
4.6
|
61.8
|
1.0
|
|
CA
|
A:ASP95
|
4.7
|
91.7
|
1.0
|
|
CB
|
A:TYR99
|
4.7
|
65.6
|
1.0
|
|
CB
|
A:ASP93
|
4.7
|
74.8
|
1.0
|
|
OD2
|
A:ASP93
|
4.8
|
68.2
|
1.0
|
|
N
|
A:GLY96
|
4.8
|
76.1
|
1.0
|
|
C
|
A:ASP93
|
4.8
|
61.8
|
1.0
|
|
C
|
A:ILE100
|
4.9
|
82.8
|
1.0
|
|
CA
|
A:ASN97
|
4.9
|
63.2
|
1.0
|
|
C
|
A:ASP95
|
4.9
|
82.0
|
1.0
|
|
OG
|
A:SER101
|
5.0
|
97.3
|
1.0
|
|
CB
|
A:GLU104
|
5.0
|
65.2
|
1.0
|
|
Calcium binding site 2 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 2 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:79.3
occ:1.00
|
OD1
|
A:ASP131
|
2.1
|
154.3
|
1.0
|
|
OD1
|
A:ASP133
|
2.2
|
140.8
|
1.0
|
|
OE1
|
A:GLU140
|
2.4
|
74.9
|
1.0
|
|
O
|
A:GLN135
|
2.4
|
72.5
|
1.0
|
|
OD2
|
A:ASP131
|
2.5
|
79.6
|
1.0
|
|
OD1
|
A:ASP129
|
2.5
|
80.0
|
1.0
|
|
OE2
|
A:GLU140
|
2.6
|
86.6
|
1.0
|
|
CG
|
A:ASP131
|
2.6
|
111.8
|
1.0
|
|
CD
|
A:GLU140
|
2.7
|
82.4
|
1.0
|
|
CG
|
A:ASP133
|
3.0
|
115.0
|
1.0
|
|
OD2
|
A:ASP133
|
3.3
|
122.8
|
1.0
|
|
ND2
|
A:ASN137
|
3.5
|
70.3
|
1.0
|
|
C
|
A:GLN135
|
3.6
|
72.1
|
1.0
|
|
CG
|
A:ASP129
|
3.7
|
81.5
|
1.0
|
|
N
|
A:ASN137
|
4.0
|
68.1
|
1.0
|
|
CG
|
A:GLU140
|
4.0
|
84.2
|
1.0
|
|
CB
|
A:ASP131
|
4.2
|
93.3
|
1.0
|
|
CB
|
A:ASP133
|
4.2
|
95.3
|
1.0
|
|
CA
|
A:VAL136
|
4.3
|
70.8
|
1.0
|
|
N
|
A:ASP133
|
4.3
|
77.7
|
1.0
|
|
CG
|
A:ASN137
|
4.3
|
69.1
|
1.0
|
|
OD2
|
A:ASP129
|
4.3
|
82.5
|
1.0
|
|
N
|
A:VAL136
|
4.4
|
71.3
|
1.0
|
|
N
|
A:ASP131
|
4.5
|
81.6
|
1.0
|
|
N
|
A:GLN135
|
4.5
|
86.2
|
1.0
|
|
C
|
A:VAL136
|
4.6
|
68.7
|
1.0
|
|
CA
|
A:ASP129
|
4.6
|
86.9
|
1.0
|
|
CA
|
A:GLN135
|
4.6
|
77.8
|
1.0
|
|
CB
|
A:ASN137
|
4.7
|
67.4
|
1.0
|
|
CA
|
A:ASP133
|
4.7
|
77.1
|
1.0
|
|
CB
|
A:ASP129
|
4.7
|
82.4
|
1.0
|
|
N
|
A:GLY132
|
4.8
|
91.0
|
1.0
|
|
N
|
A:ILE130
|
4.8
|
90.3
|
1.0
|
|
CA
|
A:ASP131
|
4.8
|
80.8
|
1.0
|
|
CD1
|
A:TYR99
|
4.9
|
69.0
|
1.0
|
|
CB
|
A:GLU140
|
4.9
|
85.1
|
1.0
|
|
CA
|
A:ASN137
|
5.0
|
67.1
|
1.0
|
|
CE1
|
A:TYR99
|
5.0
|
71.6
|
1.0
|
|
Calcium binding site 3 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 3 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:66.8
occ:1.00
|
O
|
A:THR26
|
2.2
|
103.5
|
1.0
|
|
OD1
|
A:ASP22
|
2.3
|
97.1
|
1.0
|
|
OD1
|
A:ASP24
|
2.3
|
79.2
|
1.0
|
|
OD1
|
A:ASP20
|
2.3
|
65.6
|
1.0
|
|
OE1
|
A:GLU31
|
2.5
|
105.9
|
1.0
|
|
OE2
|
A:GLU31
|
2.5
|
109.1
|
1.0
|
|
CD
|
A:GLU31
|
2.8
|
101.0
|
1.0
|
|
CG
|
A:ASP22
|
2.9
|
94.9
|
1.0
|
|
OD2
|
A:ASP22
|
3.0
|
90.1
|
1.0
|
|
CG
|
A:ASP24
|
3.1
|
79.3
|
1.0
|
|
OD2
|
A:ASP24
|
3.3
|
82.7
|
1.0
|
|
C
|
A:THR26
|
3.4
|
83.0
|
1.0
|
|
CG
|
A:ASP20
|
3.4
|
78.0
|
1.0
|
|
CG2
|
A:THR28
|
3.7
|
73.1
|
1.0
|
|
OD2
|
A:ASP20
|
4.1
|
92.2
|
1.0
|
|
N
|
A:THR28
|
4.1
|
64.7
|
1.0
|
|
CG
|
A:GLU31
|
4.2
|
88.1
|
1.0
|
|
N
|
A:ILE27
|
4.3
|
70.9
|
1.0
|
|
CA
|
A:ILE27
|
4.3
|
64.0
|
1.0
|
|
OG1
|
A:THR26
|
4.3
|
101.8
|
1.0
|
|
N
|
A:THR26
|
4.3
|
61.6
|
1.0
|
|
CA
|
A:ASP20
|
4.4
|
68.5
|
1.0
|
|
CB
|
A:ASP20
|
4.4
|
75.2
|
1.0
|
|
CB
|
A:ASP24
|
4.4
|
75.7
|
1.0
|
|
CB
|
A:ASP22
|
4.4
|
94.5
|
1.0
|
|
CA
|
A:THR26
|
4.4
|
72.4
|
1.0
|
|
N
|
A:ASP24
|
4.5
|
63.5
|
1.0
|
|
N
|
A:GLY23
|
4.6
|
77.6
|
1.0
|
|
N
|
A:ASP22
|
4.6
|
79.5
|
1.0
|
|
C
|
A:ILE27
|
4.7
|
64.3
|
1.0
|
|
C
|
A:ASP20
|
4.8
|
67.2
|
1.0
|
|
CB
|
A:THR28
|
4.9
|
85.1
|
1.0
|
|
CA
|
A:ASP22
|
4.9
|
85.0
|
1.0
|
|
CA
|
A:ASP24
|
5.0
|
70.0
|
1.0
|
|
CB
|
A:THR26
|
5.0
|
90.2
|
1.0
|
|
N
|
A:LYS21
|
5.0
|
66.8
|
1.0
|
|
CB
|
A:GLU31
|
5.0
|
72.8
|
1.0
|
|
Calcium binding site 4 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 4 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca204
b:44.3
occ:1.00
|
OE2
|
A:GLU67
|
1.9
|
121.2
|
1.0
|
|
OD1
|
A:ASP58
|
2.1
|
105.2
|
1.0
|
|
CD
|
A:GLU67
|
2.2
|
114.9
|
1.0
|
|
OE1
|
A:GLU67
|
2.2
|
93.3
|
1.0
|
|
OD1
|
A:ASP56
|
2.4
|
86.7
|
1.0
|
|
OD1
|
A:ASN60
|
2.6
|
91.8
|
1.0
|
|
O
|
A:THR62
|
2.7
|
63.6
|
1.0
|
|
CG
|
A:ASP58
|
2.9
|
78.5
|
1.0
|
|
OD2
|
A:ASP58
|
3.1
|
78.2
|
1.0
|
|
CG
|
A:ASN60
|
3.3
|
92.3
|
1.0
|
|
CG
|
A:GLU67
|
3.6
|
90.2
|
1.0
|
|
CG
|
A:ASP56
|
3.7
|
86.6
|
1.0
|
|
ND2
|
A:ASN60
|
3.7
|
85.2
|
1.0
|
|
C
|
A:THR62
|
3.9
|
62.6
|
1.0
|
|
N
|
A:ASP58
|
4.2
|
72.0
|
1.0
|
|
CB
|
A:ASP58
|
4.3
|
77.0
|
1.0
|
|
CA
|
A:ILE63
|
4.3
|
64.4
|
1.0
|
|
N
|
A:ASP64
|
4.4
|
82.4
|
1.0
|
|
N
|
A:ASN60
|
4.4
|
77.2
|
1.0
|
|
OD2
|
A:ASP56
|
4.4
|
71.8
|
1.0
|
|
OD1
|
A:ASP64
|
4.5
|
76.1
|
1.0
|
|
CB
|
A:ASN60
|
4.5
|
91.9
|
1.0
|
|
CA
|
A:ASP56
|
4.5
|
85.8
|
1.0
|
|
CB
|
A:GLU67
|
4.5
|
77.1
|
1.0
|
|
N
|
A:ALA57
|
4.5
|
77.3
|
1.0
|
|
N
|
A:GLY59
|
4.5
|
73.7
|
1.0
|
|
N
|
A:ILE63
|
4.6
|
61.5
|
1.0
|
|
CG
|
A:ASP64
|
4.6
|
77.3
|
1.0
|
|
CA
|
A:ASP58
|
4.7
|
73.5
|
1.0
|
|
CB
|
A:ASP56
|
4.7
|
89.4
|
1.0
|
|
OD2
|
A:ASP64
|
4.7
|
74.1
|
1.0
|
|
C
|
A:ASP56
|
4.8
|
84.9
|
1.0
|
|
C
|
A:ILE63
|
4.9
|
69.0
|
1.0
|
|
N
|
A:THR62
|
4.9
|
65.7
|
1.0
|
|
C
|
A:ASP58
|
4.9
|
84.1
|
1.0
|
|
CA
|
A:ASN60
|
5.0
|
79.0
|
1.0
|
|
Calcium binding site 5 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 5 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
Calcium binding site 6 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 6 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:74.6
occ:1.00
|
OD1
|
B:ASP129
|
2.0
|
101.5
|
1.0
|
|
OE1
|
B:GLU140
|
2.2
|
116.4
|
1.0
|
|
O
|
B:GLN135
|
2.3
|
102.8
|
1.0
|
|
OD1
|
B:ASP133
|
2.3
|
108.0
|
1.0
|
|
OE2
|
B:GLU140
|
2.4
|
107.8
|
1.0
|
|
OD1
|
B:ASP131
|
2.4
|
84.6
|
1.0
|
|
CD
|
B:GLU140
|
2.5
|
99.0
|
1.0
|
|
CG
|
B:ASP129
|
3.1
|
105.7
|
1.0
|
|
CG
|
B:ASP133
|
3.4
|
106.3
|
1.0
|
|
C
|
B:GLN135
|
3.5
|
89.1
|
1.0
|
|
CG
|
B:ASP131
|
3.5
|
77.1
|
1.0
|
|
CA
|
B:ASP129
|
3.8
|
92.5
|
1.0
|
|
OD2
|
B:ASP133
|
3.9
|
106.2
|
1.0
|
|
OD2
|
B:ASP131
|
3.9
|
76.4
|
1.0
|
|
OD2
|
B:ASP129
|
3.9
|
106.8
|
1.0
|
|
CG
|
B:GLU140
|
4.0
|
86.3
|
1.0
|
|
CB
|
B:ASP129
|
4.0
|
102.4
|
1.0
|
|
ND2
|
B:ASN137
|
4.1
|
77.2
|
1.0
|
|
CA
|
B:VAL136
|
4.1
|
73.8
|
1.0
|
|
N
|
B:ASN137
|
4.2
|
68.8
|
1.0
|
|
N
|
B:VAL136
|
4.2
|
82.1
|
1.0
|
|
N
|
B:ILE130
|
4.3
|
91.5
|
1.0
|
|
N
|
B:ASP133
|
4.3
|
101.4
|
1.0
|
|
N
|
B:GLN135
|
4.4
|
90.9
|
1.0
|
|
C
|
B:ASP129
|
4.4
|
99.3
|
1.0
|
|
N
|
B:ASP131
|
4.4
|
71.4
|
1.0
|
|
N
|
B:GLY132
|
4.4
|
76.9
|
1.0
|
|
CA
|
B:GLN135
|
4.6
|
83.8
|
1.0
|
|
CB
|
B:ASP133
|
4.6
|
103.2
|
1.0
|
|
C
|
B:VAL136
|
4.7
|
70.4
|
1.0
|
|
CB
|
B:GLU140
|
4.7
|
75.1
|
1.0
|
|
CB
|
B:ASP131
|
4.8
|
70.0
|
1.0
|
|
CG
|
B:ASN137
|
4.9
|
80.2
|
1.0
|
|
CA
|
B:ASP133
|
4.9
|
91.1
|
1.0
|
|
N
|
B:GLY134
|
4.9
|
77.3
|
1.0
|
|
CA
|
B:ASP131
|
4.9
|
70.1
|
1.0
|
|
C
|
B:ASP131
|
4.9
|
70.0
|
1.0
|
|
O
|
B:ALA128
|
5.0
|
76.8
|
1.0
|
|
Calcium binding site 7 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 7 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca203
b:70.5
occ:1.00
|
OD1
|
B:ASP24
|
2.1
|
126.8
|
1.0
|
|
OE1
|
B:GLU31
|
2.1
|
148.4
|
1.0
|
|
OE2
|
B:GLU31
|
2.2
|
131.9
|
1.0
|
|
O
|
B:THR26
|
2.3
|
96.5
|
1.0
|
|
CD
|
B:GLU31
|
2.4
|
129.0
|
1.0
|
|
OD1
|
B:ASP22
|
2.5
|
81.2
|
1.0
|
|
OD1
|
B:ASP20
|
2.5
|
64.7
|
1.0
|
|
CG
|
B:ASP24
|
2.8
|
92.0
|
1.0
|
|
CG
|
B:ASP22
|
3.3
|
77.2
|
1.0
|
|
OD2
|
B:ASP24
|
3.3
|
95.7
|
1.0
|
|
OD2
|
B:ASP22
|
3.4
|
66.2
|
1.0
|
|
C
|
B:THR26
|
3.4
|
82.8
|
1.0
|
|
CG
|
B:ASP20
|
3.7
|
72.1
|
1.0
|
|
CG2
|
B:THR28
|
3.8
|
79.6
|
1.0
|
|
CB
|
B:ASP24
|
3.9
|
80.9
|
1.0
|
|
CG
|
B:GLU31
|
3.9
|
106.9
|
1.0
|
|
N
|
B:THR28
|
4.0
|
64.9
|
1.0
|
|
CA
|
B:ILE27
|
4.1
|
70.1
|
1.0
|
|
CA
|
B:ASP20
|
4.1
|
81.1
|
1.0
|
|
N
|
B:ILE27
|
4.2
|
75.8
|
1.0
|
|
N
|
B:ASP24
|
4.3
|
71.9
|
1.0
|
|
CB
|
B:ASP20
|
4.4
|
77.1
|
1.0
|
|
CB
|
B:GLU31
|
4.4
|
90.1
|
1.0
|
|
C
|
B:ILE27
|
4.5
|
67.6
|
1.0
|
|
OG1
|
B:THR26
|
4.5
|
69.4
|
1.0
|
|
N
|
B:THR26
|
4.5
|
59.7
|
1.0
|
|
CA
|
B:ASP24
|
4.5
|
76.3
|
1.0
|
|
CA
|
B:THR26
|
4.6
|
67.7
|
1.0
|
|
C
|
B:ASP20
|
4.6
|
86.4
|
1.0
|
|
OD2
|
B:ASP20
|
4.6
|
70.6
|
1.0
|
|
CB
|
B:ASP22
|
4.7
|
79.3
|
1.0
|
|
N
|
B:LYS21
|
4.7
|
87.7
|
1.0
|
|
N
|
B:ASP22
|
4.7
|
77.8
|
1.0
|
|
OG1
|
B:THR28
|
4.7
|
74.4
|
1.0
|
|
CB
|
B:THR28
|
4.8
|
73.1
|
1.0
|
|
N
|
B:GLY23
|
4.8
|
74.2
|
1.0
|
|
C
|
B:ASP24
|
5.0
|
86.3
|
1.0
|
|
CA
|
B:THR28
|
5.0
|
68.6
|
1.0
|
|
Calcium binding site 8 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 8 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca204
b:76.4
occ:1.00
|
OE1
|
B:GLU67
|
2.1
|
129.4
|
1.0
|
|
O
|
B:THR62
|
2.2
|
62.1
|
1.0
|
|
OE2
|
B:GLU67
|
2.3
|
126.1
|
1.0
|
|
OD1
|
B:ASP58
|
2.4
|
69.8
|
1.0
|
|
OD1
|
B:ASN60
|
2.4
|
109.0
|
1.0
|
|
OD1
|
B:ASP56
|
2.5
|
104.1
|
1.0
|
|
CD
|
B:GLU67
|
2.5
|
112.2
|
1.0
|
|
OD2
|
B:ASP58
|
2.8
|
74.3
|
1.0
|
|
CG
|
B:ASP58
|
2.9
|
69.4
|
1.0
|
|
CG
|
B:ASN60
|
3.3
|
105.4
|
1.0
|
|
C
|
B:THR62
|
3.4
|
61.1
|
1.0
|
|
ND2
|
B:ASN60
|
3.7
|
99.7
|
1.0
|
|
CG
|
B:ASP56
|
3.8
|
102.1
|
1.0
|
|
CA
|
B:ILE63
|
3.9
|
73.0
|
1.0
|
|
CG
|
B:GLU67
|
4.0
|
83.8
|
1.0
|
|
N
|
B:ILE63
|
4.1
|
61.1
|
1.0
|
|
N
|
B:ASP64
|
4.2
|
98.6
|
1.0
|
|
CB
|
B:ASP58
|
4.4
|
71.1
|
1.0
|
|
OD1
|
B:ASP64
|
4.4
|
90.0
|
1.0
|
|
N
|
B:THR62
|
4.4
|
61.5
|
1.0
|
|
OD2
|
B:ASP56
|
4.5
|
103.2
|
1.0
|
|
N
|
B:ASN60
|
4.5
|
87.9
|
1.0
|
|
N
|
B:ASP58
|
4.5
|
84.2
|
1.0
|
|
CA
|
B:THR62
|
4.6
|
63.2
|
1.0
|
|
CB
|
B:ASN60
|
4.6
|
103.4
|
1.0
|
|
C
|
B:ILE63
|
4.6
|
88.5
|
1.0
|
|
CB
|
B:GLU67
|
4.6
|
74.3
|
1.0
|
|
CG
|
B:ASP64
|
4.6
|
86.7
|
1.0
|
|
CA
|
B:ASP56
|
4.7
|
82.1
|
1.0
|
|
OD2
|
B:ASP64
|
4.8
|
84.4
|
1.0
|
|
N
|
B:ALA57
|
4.8
|
74.3
|
1.0
|
|
N
|
B:GLY59
|
4.8
|
79.7
|
1.0
|
|
CB
|
B:ASP56
|
4.8
|
94.8
|
1.0
|
|
CA
|
B:ASP58
|
4.9
|
74.5
|
1.0
|
|
OG1
|
B:THR62
|
5.0
|
105.9
|
1.0
|
|
N
|
B:GLY61
|
5.0
|
64.6
|
1.0
|
|
Calcium binding site 9 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 9 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca205
b:71.3
occ:1.00
|
O
|
B:TYR99
|
2.1
|
86.0
|
1.0
|
|
OD1
|
B:ASN97
|
2.2
|
107.9
|
1.0
|
|
OE1
|
B:GLU104
|
2.3
|
77.7
|
1.0
|
|
OD1
|
B:ASP95
|
2.4
|
94.3
|
1.0
|
|
OD1
|
B:ASP93
|
2.5
|
66.7
|
1.0
|
|
OE2
|
B:GLU104
|
2.6
|
64.3
|
1.0
|
|
CD
|
B:GLU104
|
2.7
|
68.1
|
1.0
|
|
CG
|
B:ASN97
|
3.1
|
92.5
|
1.0
|
|
C
|
B:TYR99
|
3.3
|
68.6
|
1.0
|
|
CG
|
B:ASP95
|
3.5
|
96.2
|
1.0
|
|
ND2
|
B:ASN97
|
3.5
|
78.0
|
1.0
|
|
CG
|
B:ASP93
|
3.7
|
67.3
|
1.0
|
|
OD2
|
B:ASP95
|
3.8
|
96.2
|
1.0
|
|
N
|
B:TYR99
|
4.0
|
75.4
|
1.0
|
|
CA
|
B:TYR99
|
4.1
|
70.1
|
1.0
|
|
CG
|
B:GLU104
|
4.2
|
61.5
|
1.0
|
|
N
|
B:SER101
|
4.2
|
87.9
|
1.0
|
|
N
|
B:ILE100
|
4.3
|
64.5
|
1.0
|
|
CA
|
B:ILE100
|
4.3
|
67.0
|
1.0
|
|
CB
|
B:TYR99
|
4.4
|
64.3
|
1.0
|
|
CB
|
B:ASN97
|
4.4
|
84.0
|
1.0
|
|
CA
|
B:ASP93
|
4.5
|
61.8
|
1.0
|
|
CB
|
B:ASP93
|
4.5
|
67.1
|
1.0
|
|
OD2
|
B:ASP93
|
4.6
|
66.9
|
1.0
|
|
N
|
B:ASN97
|
4.6
|
77.5
|
1.0
|
|
N
|
B:ASP95
|
4.6
|
64.1
|
1.0
|
|
OG
|
B:SER101
|
4.8
|
74.7
|
1.0
|
|
CB
|
B:ASP95
|
4.8
|
93.9
|
1.0
|
|
C
|
B:ILE100
|
4.8
|
81.2
|
1.0
|
|
N
|
B:LYS94
|
4.8
|
56.4
|
1.0
|
|
C
|
B:ASP93
|
4.9
|
59.0
|
1.0
|
|
CA
|
B:ASN97
|
4.9
|
75.4
|
1.0
|
|
N
|
B:GLY98
|
4.9
|
74.1
|
1.0
|
|
CB
|
B:SER101
|
4.9
|
82.8
|
1.0
|
|
CB
|
B:GLU104
|
5.0
|
54.8
|
1.0
|
|
Calcium binding site 10 out
of 29 in 6yns
Go back to
Calcium Binding Sites List in 6yns
Calcium binding site 10 out
of 29 in the Cam-P458 Complex (Crystal Form 2)
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Cam-P458 Complex (Crystal Form 2) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca201
b:64.2
occ:1.00
|
O
|
C:THR26
|
2.0
|
115.2
|
1.0
|
|
OE1
|
C:GLU31
|
2.3
|
99.8
|
1.0
|
|
OE2
|
C:GLU31
|
2.3
|
102.0
|
1.0
|
|
OD1
|
C:ASP24
|
2.3
|
88.0
|
1.0
|
|
OD1
|
C:ASP20
|
2.3
|
84.5
|
1.0
|
|
OD1
|
C:ASP22
|
2.4
|
83.1
|
1.0
|
|
CD
|
C:GLU31
|
2.6
|
100.0
|
1.0
|
|
CG
|
C:ASP24
|
3.1
|
87.3
|
1.0
|
|
CG
|
C:ASP22
|
3.2
|
82.6
|
1.0
|
|
OD2
|
C:ASP24
|
3.3
|
89.1
|
1.0
|
|
C
|
C:THR26
|
3.3
|
99.2
|
1.0
|
|
OD2
|
C:ASP22
|
3.3
|
82.3
|
1.0
|
|
CG
|
C:ASP20
|
3.5
|
83.6
|
1.0
|
|
CG2
|
C:THR28
|
3.6
|
104.3
|
1.0
|
|
N
|
C:THR28
|
4.1
|
86.3
|
1.0
|
|
CG
|
C:GLU31
|
4.1
|
95.2
|
1.0
|
|
N
|
C:ILE27
|
4.1
|
92.0
|
1.0
|
|
CA
|
C:ILE27
|
4.1
|
79.0
|
1.0
|
|
N
|
C:THR26
|
4.2
|
94.8
|
1.0
|
|
CA
|
C:ASP20
|
4.3
|
79.6
|
1.0
|
|
OD2
|
C:ASP20
|
4.3
|
86.7
|
1.0
|
|
CA
|
C:THR26
|
4.3
|
98.8
|
1.0
|
|
OG1
|
C:THR26
|
4.3
|
115.7
|
1.0
|
|
CB
|
C:ASP24
|
4.4
|
86.5
|
1.0
|
|
CB
|
C:ASP20
|
4.4
|
82.6
|
1.0
|
|
N
|
C:ASP22
|
4.6
|
84.8
|
1.0
|
|
CB
|
C:ASP22
|
4.6
|
84.0
|
1.0
|
|
C
|
C:ILE27
|
4.6
|
76.1
|
1.0
|
|
N
|
C:ASP24
|
4.7
|
99.7
|
1.0
|
|
C
|
C:ASP20
|
4.7
|
81.4
|
1.0
|
|
CB
|
C:GLU31
|
4.7
|
93.7
|
1.0
|
|
N
|
C:LYS21
|
4.7
|
78.7
|
1.0
|
|
CB
|
C:THR28
|
4.8
|
99.0
|
1.0
|
|
N
|
C:GLY23
|
4.8
|
105.0
|
1.0
|
|
OG1
|
C:THR28
|
4.9
|
95.3
|
1.0
|
|
CB
|
C:THR26
|
4.9
|
105.5
|
1.0
|
|
Reference:
A.Voegele,
M.Sadi,
D.P.O'brien,
P.Gehan,
D.Raoux‐Barbot,
M.Davi,
S.Hoos,
S.Brule,
B.Raynal,
P.Weber,
A.E.Mechaly,
A.Haouz,
N.Rodriguez,
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D.Durand,
S.Brier,
D.Ladant,
A.Chenal.
A High-Affinity Calmodulin-Binding Site in the Cyaa Toxin Translocation Domain Is Essential For Invasion of Eukaryotic Cells Adv Sci 2021.
ISSN: ESSN 2198-3844
DOI: 10.1002/ADVS.202003630
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