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Calcium in PDB 6yvi: Eed in Complex with A Cyano-Benzofuran

Protein crystallography data

The structure of Eed in Complex with A Cyano-Benzofuran, PDB code: 6yvi was solved by J.A.Read, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.36 / 2.26
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.888, 86.528, 97.186, 90, 90, 90
R / Rfree (%) 18.2 / 24.1

Other elements in 6yvi:

The structure of Eed in Complex with A Cyano-Benzofuran also contains other interesting chemical elements:

Fluorine (F) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Eed in Complex with A Cyano-Benzofuran (pdb code 6yvi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Eed in Complex with A Cyano-Benzofuran, PDB code: 6yvi:

Calcium binding site 1 out of 1 in 6yvi

Go back to Calcium Binding Sites List in 6yvi
Calcium binding site 1 out of 1 in the Eed in Complex with A Cyano-Benzofuran


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Eed in Complex with A Cyano-Benzofuran within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:58.3
occ:1.00
OD2 A:ASP341 2.2 44.3 1.0
O A:HOH704 2.6 48.4 1.0
O A:HOH746 3.2 39.4 1.0
CG A:ASP341 3.4 36.0 1.0
CB A:ASP341 4.2 30.9 1.0
OD1 A:ASP341 4.3 30.8 1.0
OD1 A:ASP339 4.6 46.1 1.0
OD2 A:ASP317 4.8 54.0 1.0
O A:HOH664 4.9 17.9 1.0
OE1 A:GLU249 4.9 28.5 1.0

Reference:

J.A.Read, J.A.Read. N/A N/A.
Page generated: Wed Jul 9 20:27:59 2025

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