Atomistry » Calcium » PDB 6yza-6zqy » 6z7p
Atomistry »
  Calcium »
    PDB 6yza-6zqy »
      6z7p »

Calcium in PDB 6z7p: Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Calcium atom in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide (pdb code 6z7p). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 22 binding sites of Calcium where determined in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide, PDB code: 6z7p:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 1 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9001

b:0.0
occ:1.00
 OE2 A:GLU317 2.2 0.0 1.0
O A:GLY315 2.3 0.0 1.0
OD2 A:ASP294 2.6 0.0 1.0
O A:GLY290 2.6 0.0 1.0
O A:ALA291 2.8 0.0 1.0
CD A:GLU317 3.0 0.0 1.0
OE1 A:GLU317 3.0 0.0 1.0
C A:ALA291 3.3 0.0 1.0
C A:GLY290 3.4 0.0 1.0
C A:GLY315 3.4 0.0 1.0
CG A:ASP294 3.5 0.0 1.0
CB A:ASP294 3.8 0.0 1.0
N A:GLY292 3.9 0.0 1.0
N A:GLY290 4.0 0.0 1.0
CA A:GLY292 4.0 0.0 1.0
N A:ALA291 4.0 0.0 1.0
CA A:ALA291 4.1 0.0 1.0
C A:GLY289 4.1 0.0 1.0
CA A:GLY315 4.2 0.0 1.0
CA A:GLY289 4.3 0.0 1.0
CA A:GLY290 4.3 0.0 1.0
CG A:GLU317 4.5 0.0 1.0
N A:ILE316 4.5 0.0 1.0
OD1 A:ASP294 4.5 0.0 1.0
CA A:ILE316 4.7 0.0 1.0
O A:GLY289 4.7 0.0 1.0
N A:ASP294 4.8 0.0 1.0
N A:THR293 4.9 0.0 1.0
C A:GLY292 4.9 0.0 1.0
CA A:ASP294 5.0 0.0 1.0
CA A:CA9002 5.0 0.0 1.0

Calcium binding site 2 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 2 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9002

b:0.0
occ:1.00
 O A:GLY289 2.4 0.0 1.0
O A:ASN266 2.7 0.0 1.0
OD2 A:ASP268 2.7 0.0 1.0
OD1 A:ASP294 2.7 0.0 1.0
N A:ASN266 2.8 0.0 1.0
OD1 A:ASP268 2.9 0.0 1.0
OD2 A:ASP294 3.0 0.0 1.0
N A:ALA265 3.0 0.0 1.0
CG A:ASP268 3.1 0.0 1.0
CG A:ASP294 3.3 0.0 1.0
CA A:ALA265 3.3 0.0 1.0
C A:GLY289 3.5 0.0 1.0
O A:ALA291 3.5 0.0 1.0
C A:ALA265 3.5 0.0 1.0
C A:ASN266 3.6 0.0 1.0
N A:ALA291 3.6 0.0 1.0
N A:THR264 3.7 0.0 1.0
CA A:ASN266 3.8 0.0 1.0
C A:GLY290 4.0 0.0 1.0
CA A:GLY290 4.0 0.0 1.0
C A:THR264 4.1 0.0 1.0
N A:GLY290 4.2 0.0 1.0
C A:GLY263 4.2 0.0 1.0
C A:ALA291 4.3 0.0 1.0
N A:ASP268 4.3 0.0 1.0
CA A:GLY263 4.3 0.0 1.0
CA A:ALA291 4.4 0.0 1.0
CA A:THR264 4.4 0.0 1.0
OG1 A:THR264 4.4 0.0 1.0
CB A:ASP268 4.5 0.0 1.0
CA A:GLY289 4.5 0.0 1.0
CB A:ASN266 4.7 0.0 1.0
O A:ALA265 4.7 0.0 1.0
CB A:ALA265 4.8 0.0 1.0
CB A:ASP294 4.8 0.0 1.0
O A:GLY290 4.8 0.0 1.0
N A:ASN267 4.8 0.0 1.0
CB A:ALA291 4.9 0.0 1.0
CA A:ASP268 4.9 0.0 1.0
CA A:CA9001 5.0 0.0 1.0

Calcium binding site 3 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 3 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9003

b:0.0
occ:1.00
 OD2 A:ASP259 2.1 0.0 1.0
O A:THR255 2.5 0.0 1.0
OD1 A:ASP285 2.5 0.0 1.0
O A:GLY257 2.5 0.0 1.0
OG1 A:THR282 2.6 0.0 1.0
O A:THR280 2.6 0.0 1.0
OD2 A:ASP285 2.7 0.0 1.0
CG A:ASP285 2.9 0.0 1.0
CG A:ASP259 3.3 0.0 1.0
C A:GLY257 3.5 0.0 1.0
C A:THR255 3.6 0.0 1.0
C A:THR280 3.7 0.0 1.0
N A:GLY257 3.9 0.0 1.0
N A:THR255 4.0 0.0 1.0
CB A:THR282 4.0 0.0 1.0
OD1 A:ASP259 4.0 0.0 1.0
N A:THR282 4.1 0.0 1.0
N A:ASP259 4.1 0.0 1.0
CA A:GLY257 4.2 0.0 1.0
CB A:ASP259 4.2 0.0 1.0
C A:THR256 4.3 0.0 1.0
N A:THR258 4.4 0.0 1.0
OG1 A:THR255 4.4 0.0 1.0
CA A:THR255 4.4 0.0 1.0
CD2 A:LEU254 4.4 0.0 1.0
CB A:ASP285 4.4 0.0 1.0
CA A:THR258 4.5 0.0 1.0
CB A:LEU254 4.5 0.0 1.0
CA A:THR280 4.5 0.0 1.0
CG2 A:THR282 4.6 0.0 1.0
CA A:THR282 4.6 0.0 1.0
N A:THR256 4.6 0.0 1.0
CG A:LEU254 4.6 0.0 1.0
CA A:THR256 4.6 0.0 1.0
N A:LEU281 4.6 0.0 1.0
CA A:LEU281 4.7 0.0 1.0
C A:THR258 4.7 0.0 1.0
C A:LEU281 4.8 0.0 1.0
C A:LEU254 4.8 0.0 1.0
O A:THR282 4.8 0.0 1.0
CB A:THR280 4.8 0.0 1.0
O A:THR256 4.8 0.0 1.0
CA A:ASP259 4.8 0.0 1.0
CA A:LEU254 5.0 0.0 1.0
C A:THR282 5.0 0.0 1.0

Calcium binding site 4 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 4 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9004

b:0.0
occ:1.00
 O A:LEU532 2.3 0.0 1.0
OD1 A:ASP562 2.4 0.0 1.0
OD2 A:ASP562 2.8 0.0 1.0
CG A:ASP562 3.0 0.0 1.0
C A:LEU532 3.5 0.0 1.0
CA A:THR533 4.2 0.0 1.0
N A:THR533 4.3 0.0 1.0
C A:ALA531 4.4 0.0 1.0
O A:ALA531 4.4 0.0 1.0
OE2 A:GLU558 4.4 0.0 1.0
O A:THR533 4.5 0.0 1.0
CB A:ASP562 4.5 0.0 1.0
N A:LEU532 4.5 0.0 1.0
CA A:LEU532 4.5 0.0 1.0
C A:THR533 4.6 0.0 1.0
O A:GLY530 4.6 0.0 1.0
O A:ALA534 4.7 0.0 1.0
CA A:ALA531 4.8 0.0 1.0
CB A:LEU532 5.0 0.0 1.0

Calcium binding site 5 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 5 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9005

b:0.0
occ:1.00
 O A:ALA559 2.3 0.0 1.0
OD1 A:ASP586 2.7 0.0 1.0
O A:ASP562 2.9 0.0 1.0
OD2 A:ASP586 2.9 0.0 1.0
CG A:ASP586 3.2 0.0 1.0
C A:ALA559 3.6 0.0 1.0
O A:ALA560 3.6 0.0 1.0
C A:ASP562 4.0 0.0 1.0
C A:ALA560 4.2 0.0 1.0
N A:ASP562 4.3 0.0 1.0
CA A:ALA559 4.5 0.0 1.0
N A:ALA560 4.6 0.0 1.0
CA A:ASP562 4.8 0.0 1.0
C A:ALA561 4.8 0.0 1.0
CB A:ASP586 4.8 0.0 1.0
CA A:ALA560 4.8 0.0 1.0
N A:ALA561 4.8 0.0 1.0

Calcium binding site 6 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 6 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9006

b:0.0
occ:1.00
 OD1 A:ASP656 2.3 0.0 1.0
O A:ALA653 2.4 0.0 1.0
OD2 A:ASP638 2.4 0.0 1.0
O A:GLY634 2.4 0.0 1.0
O A:MET651 2.5 0.0 1.0
OD2 A:ASP656 2.6 0.0 1.0
O A:GLY636 2.8 0.0 1.0
CG A:ASP656 2.8 0.0 1.0
CG A:ASP638 3.4 0.0 1.0
C A:ALA653 3.6 0.0 1.0
C A:GLY634 3.6 0.0 1.0
C A:MET651 3.6 0.0 1.0
C A:GLY652 3.8 0.0 1.0
C A:GLY636 3.9 0.0 1.0
O A:ALA635 3.9 0.0 1.0
N A:ALA653 4.0 0.0 1.0
C A:ALA635 4.0 0.0 1.0
N A:GLY634 4.0 0.0 1.0
O A:GLY652 4.0 0.0 1.0
N A:ASP638 4.1 0.0 1.0
CB A:ASP638 4.1 0.0 1.0
CA A:GLY652 4.1 0.0 1.0
N A:GLY636 4.2 0.0 1.0
OD1 A:ASP638 4.3 0.0 1.0
N A:GLY652 4.3 0.0 1.0
CB A:ASP656 4.3 0.0 1.0
O A:GLY654 4.4 0.0 1.0
CA A:CA9007 4.4 0.0 1.0
CA A:ALA653 4.4 0.0 1.0
CA A:ALA635 4.4 0.0 1.0
N A:ALA635 4.5 0.0 1.0
CA A:GLY634 4.5 0.0 1.0
N A:GLY654 4.6 0.0 1.0
C A:GLY633 4.6 0.0 1.0
CA A:GLY633 4.6 0.0 1.0
CA A:GLY636 4.6 0.0 1.0
C A:GLY654 4.7 0.0 1.0
CA A:GLY654 4.7 0.0 1.0
CA A:ASP638 4.7 0.0 1.0
CA A:MET651 4.8 0.0 1.0
N A:ALA637 4.9 0.0 1.0

Calcium binding site 7 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 7 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9007

b:0.0
occ:1.00
 O A:ASP675 2.2 0.0 1.0
O A:GLY652 2.4 0.0 1.0
OD2 A:ASP656 2.4 0.0 1.0
OD1 A:ASP678 2.5 0.0 1.0
O A:GLY654 2.6 0.0 1.0
O A:GLY673 2.6 0.0 1.0
O A:ALA653 3.2 0.0 1.0
C A:ALA653 3.3 0.0 1.0
CG A:ASP678 3.3 0.0 1.0
C A:ASP675 3.4 0.0 1.0
OD2 A:ASP678 3.5 0.0 1.0
C A:GLY652 3.5 0.0 1.0
CG A:ASP656 3.6 0.0 1.0
CA A:ALA653 3.7 0.0 1.0
C A:GLY654 3.7 0.0 1.0
N A:GLY654 3.7 0.0 1.0
C A:GLY674 3.8 0.0 1.0
C A:GLY673 3.8 0.0 1.0
N A:ASP675 3.9 0.0 1.0
O A:GLY674 4.0 0.0 1.0
N A:ALA653 4.0 0.0 1.0
CB A:ASP656 4.2 0.0 1.0
CA A:GLY674 4.2 0.0 1.0
CA A:ASP675 4.2 0.0 1.0
CA A:GLY654 4.3 0.0 1.0
O A:MET651 4.4 0.0 1.0
CA A:CA9006 4.4 0.0 1.0
N A:GLY676 4.4 0.0 1.0
N A:ASP656 4.4 0.0 1.0
N A:GLY674 4.5 0.0 1.0
OD1 A:ASP656 4.6 0.0 1.0
C A:MET651 4.6 0.0 1.0
CA A:GLY676 4.7 0.0 1.0
CB A:ASP678 4.7 0.0 1.0
CA A:GLY652 4.7 0.0 1.0
N A:GLY652 4.7 0.0 1.0
CB A:MET651 4.8 0.0 1.0
N A:ASP655 4.8 0.0 1.0
C A:GLY676 4.9 0.0 1.0
O A:GLY676 4.9 0.0 1.0
CA A:GLY673 5.0 0.0 1.0

Calcium binding site 8 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 8 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9008

b:0.0
occ:1.00
 O A:GLY674 2.4 0.0 1.0
O A:GLY676 2.4 0.0 1.0
OE2 A:GLU699 2.5 0.0 1.0
O A:GLY697 2.7 0.0 1.0
OD2 A:ASP678 2.8 0.0 1.0
OE1 A:GLU699 3.0 0.0 1.0
CD A:GLU699 3.1 0.0 1.0
N A:GLY676 3.6 0.0 1.0
C A:GLY674 3.6 0.0 1.0
C A:ASP675 3.6 0.0 1.0
C A:GLY676 3.6 0.0 1.0
C A:GLY697 3.7 0.0 1.0
CA A:ASP675 3.8 0.0 1.0
CG A:ASP678 4.0 0.0 1.0
O A:ASP675 4.1 0.0 1.0
CA A:GLY697 4.2 0.0 1.0
N A:ASP675 4.2 0.0 1.0
CA A:GLY676 4.2 0.0 1.0
CG A:GLU699 4.6 0.0 1.0
O A:GLY673 4.7 0.0 1.0
N A:THR677 4.7 0.0 1.0
CA A:GLY674 4.8 0.0 1.0
C A:GLY673 4.8 0.0 1.0
N A:ASP678 4.8 0.0 1.0
N A:PHE698 4.8 0.0 1.0
N A:GLY674 4.8 0.0 1.0
OD1 A:ASP678 4.8 0.0 1.0
CB A:ASP678 4.9 0.0 1.0
CA A:THR677 5.0 0.0 1.0

Calcium binding site 9 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 9 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9009

b:0.0
occ:1.00
 O A:ALA757 2.2 0.0 1.0
O A:GLY759 2.5 0.0 1.0
OD2 A:ASP762 2.6 0.0 1.0
O A:GLY783 2.6 0.0 1.0
OE1 A:GLU785 2.7 0.0 1.0
OE2 A:GLU785 3.2 0.0 1.0
CD A:GLU785 3.3 0.0 1.0
C A:ALA757 3.4 0.0 1.0
C A:GLY783 3.5 0.0 1.0
C A:GLY759 3.7 0.0 1.0
CG A:ASP762 3.7 0.0 1.0
CA A:GLY783 3.9 0.0 1.0
C A:THR758 3.9 0.0 1.0
O A:THR758 4.0 0.0 1.0
N A:GLY759 4.2 0.0 1.0
N A:THR758 4.3 0.0 1.0
CA A:THR758 4.3 0.0 1.0
CB A:ASP762 4.4 0.0 1.0
CA A:ALA757 4.4 0.0 1.0
CA A:GLY759 4.5 0.0 1.0
CB A:ALA757 4.6 0.0 1.0
N A:THR760 4.6 0.0 1.0
OD1 A:ASP762 4.6 0.0 1.0
N A:VAL784 4.7 0.0 1.0
CA A:THR760 4.7 0.0 1.0
CG A:GLU785 4.9 0.0 1.0

Calcium binding site 10 out of 22 in 6z7p

Go back to Calcium Binding Sites List in 6z7p
Calcium binding site 10 out of 22 in the Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Composite Model of the Caulobacter Crescentus S-Layer Bound to the O- Antigen of Lipopolysaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca9010

b:0.0
occ:1.00
 O A:SER771 2.2 0.0 1.0
O A:THR797 2.4 0.0 1.0
OD1 A:ASP793 2.5 0.0 1.0
CD2 A:HIS799 2.6 0.0 1.0
OD2 A:ASP793 2.7 0.0 1.0
OD1 A:ASN795 2.7 0.0 1.0
CG A:ASP793 2.9 0.0 1.0
C A:SER771 3.4 0.0 1.0
CG A:ASN795 3.5 0.0 1.0
NE2 A:HIS799 3.5 0.0 1.0
CG A:HIS799 3.6 0.0 1.0
C A:THR797 3.7 0.0 1.0
ND2 A:ASN795 3.7 0.0 1.0
CB A:HIS799 4.2 0.0 1.0
O A:ASN795 4.3 0.0 1.0
N A:ALA772 4.3 0.0 1.0
CB A:ASP793 4.4 0.0 1.0
C A:ALA798 4.4 0.0 1.0
N A:HIS799 4.4 0.0 1.0
CA A:ALA772 4.4 0.0 1.0
CA A:SER771 4.4 0.0 1.0
OG1 A:THR797 4.4 0.0 1.0
CA A:THR797 4.6 0.0 1.0
N A:ALA798 4.6 0.0 1.0
CE1 A:HIS799 4.6 0.0 1.0
N A:THR797 4.6 0.0 1.0
O A:ALA798 4.6 0.0 1.0
ND1 A:HIS799 4.7 0.0 1.0
CA A:ALA798 4.7 0.0 1.0
CB A:ASN795 4.7 0.0 1.0
C A:ASN795 4.8 0.0 1.0
N A:ASN795 4.8 0.0 1.0
CA A:HIS799 4.9 0.0 1.0
CB A:THR797 5.0 0.0 1.0
CA A:ASN795 5.0 0.0 1.0

Reference:

A.Von Kuegelgen, H.Tang, G.G.Hardy, D.Kureisaite-Ciziene, Y.V.Brun, P.J.Stansfeld, C.V.Robinson, T.A.M.Bharat. In Situ Structure of An Intact Lipopolysaccharide-Bound Bacterial Surface Layer. Cell V. 180 348 2020.
ISSN: ISSN 1097-4172
PubMed: 31883796
DOI: 10.1016/J.CELL.2019.12.006
Page generated: Wed Jul 9 20:29:41 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy