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Calcium in PDB 6zcc: X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate

Enzymatic activity of X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate

All present enzymatic activity of X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate:
3.8.1.5;

Protein crystallography data

The structure of X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate, PDB code: 6zcc was solved by M.Tarnawski, K.Johnsson, J.Hiblot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.53 / 1.52
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.21, 64.77, 78.85, 90, 90, 90
R / Rfree (%) 18.9 / 22.4

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate (pdb code 6zcc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate, PDB code: 6zcc:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 6zcc

Go back to Calcium Binding Sites List in 6zcc
Calcium binding site 1 out of 4 in the X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:33.7
occ:0.72
 O A:GLY19 2.2 34.8 1.0
O A:HOH413 2.4 38.5 1.0
C A:GLY19 3.4 27.6 1.0
O A:HOH418 3.4 43.4 1.0
CA A:GLY19 4.1 31.6 1.0
OE2 A:GLU16 4.2 43.3 1.0
O A:HOH450 4.3 34.3 1.0
OE2 A:GLU20 4.4 34.3 1.0
N A:GLU20 4.4 29.4 1.0
O A:HOH438 4.5 42.5 1.0
CA A:GLU20 4.6 26.0 1.0
OE1 A:GLU16 4.6 41.7 1.0
CD A:GLU16 4.8 37.6 1.0
CD A:GLU20 4.8 26.2 1.0

Calcium binding site 2 out of 4 in 6zcc

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Calcium binding site 2 out of 4 in the X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca304

b:38.1
occ:0.69
 O A:HOH488 2.3 47.2 1.0
O A:HOH419 2.4 39.0 1.0
O A:ARG153 2.4 29.1 1.0
O A:HOH649 2.4 49.1 1.0
O A:HOH699 2.5 48.3 1.0
O A:HOH578 2.7 48.2 1.0
C A:ARG153 3.6 29.2 1.0
O A:HOH509 4.1 41.1 1.0
O A:HOH595 4.3 40.2 1.0
CB A:ARG153 4.3 24.6 1.0
O A:HOH492 4.4 36.9 1.0
CA A:ARG153 4.4 29.7 1.0
OD1 A:ASN207 4.4 27.5 1.0
O A:HOH571 4.5 29.8 1.0
N A:THR154 4.6 31.0 1.0
CA A:THR154 4.7 33.1 1.0
O A:HOH683 4.9 51.1 1.0

Calcium binding site 3 out of 4 in 6zcc

Go back to Calcium Binding Sites List in 6zcc
Calcium binding site 3 out of 4 in the X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca305

b:31.1
occ:0.63
 O A:HOH547 2.3 38.6 1.0
O A:HOH655 2.4 45.0 1.0
O A:HOH680 2.4 49.1 1.0
OD1 A:ASP227 2.5 36.5 1.0
O A:HOH566 2.6 32.3 1.0
CG A:ASP227 3.5 38.9 1.0
O A:HOH616 3.6 39.2 1.0
OD2 A:ASP227 3.8 38.7 1.0
O A:HOH619 4.1 43.0 1.0
O A:GLU223 4.5 27.8 1.0
O A:HOH444 4.8 37.7 1.0
O A:HOH688 4.8 42.3 1.0
CB A:ASP227 4.9 32.3 1.0
O A:HOH627 4.9 54.3 1.0

Calcium binding site 4 out of 4 in 6zcc

Go back to Calcium Binding Sites List in 6zcc
Calcium binding site 4 out of 4 in the X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane- Tetramethylrhodamine Fluorophore Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca306

b:26.9
occ:0.60
 O A:LEU181 2.5 33.7 1.0
O A:HOH458 2.8 37.1 1.0
O A:HOH467 3.0 43.1 1.0
C A:LEU181 3.7 32.4 1.0
O A:HOH682 4.2 44.7 1.0
N A:LEU181 4.2 33.9 1.0
CB A:PRO180 4.4 32.6 1.0
OE2 A:GLU183 4.5 40.1 1.0
CA A:LEU181 4.6 30.3 1.0
N A:THR182 4.7 34.4 1.0
C A:PRO180 4.8 33.3 1.0
CA A:THR182 4.8 33.9 1.0
CA A:PRO180 4.9 35.2 1.0

Reference:

M.Tarnawski, K.Johnsson, J.Hiblot. X-Ray Structure of the Haloalkane Dehalogenase Hob (HALOTAG7-Based Oligonucleotide Binder) Labeled with A Chloroalkane-Tetramethylrhodamine Fluorophore Substrate To Be Published.
Page generated: Thu Jul 18 22:37:58 2024

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