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Calcium in PDB 7a3n: Crystal Structure of Zika Virus Envelope Glycoprotein in Complex with the Fab Fragment of the Broadly Neutralizing Human Antibody EDE1 C10

Enzymatic activity of Crystal Structure of Zika Virus Envelope Glycoprotein in Complex with the Fab Fragment of the Broadly Neutralizing Human Antibody EDE1 C10

All present enzymatic activity of Crystal Structure of Zika Virus Envelope Glycoprotein in Complex with the Fab Fragment of the Broadly Neutralizing Human Antibody EDE1 C10:
3.4.21.91; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of Crystal Structure of Zika Virus Envelope Glycoprotein in Complex with the Fab Fragment of the Broadly Neutralizing Human Antibody EDE1 C10, PDB code: 7a3n was solved by A.Sharma, M.C.Vaney, P.Guardado-Calvo, S.Duquerroy, A.Rouvinski, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.91 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 53.964, 168.61, 220.4, 90, 90, 90
R / Rfree (%) 20.3 / 24

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Zika Virus Envelope Glycoprotein in Complex with the Fab Fragment of the Broadly Neutralizing Human Antibody EDE1 C10 (pdb code 7a3n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Zika Virus Envelope Glycoprotein in Complex with the Fab Fragment of the Broadly Neutralizing Human Antibody EDE1 C10, PDB code: 7a3n:

Calcium binding site 1 out of 1 in 7a3n

Go back to Calcium Binding Sites List in 7a3n
Calcium binding site 1 out of 1 in the Crystal Structure of Zika Virus Envelope Glycoprotein in Complex with the Fab Fragment of the Broadly Neutralizing Human Antibody EDE1 C10


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Zika Virus Envelope Glycoprotein in Complex with the Fab Fragment of the Broadly Neutralizing Human Antibody EDE1 C10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:40.7
occ:1.00
 O A:THR231 2.3 31.7 1.0
OD2 A:ASP230 2.4 31.8 1.0
O A:THR233 2.4 32.3 1.0
C A:THR233 3.5 35.3 1.0
C A:THR231 3.5 42.3 1.0
CG A:ASP230 3.5 32.4 1.0
N A:THR231 3.8 37.4 1.0
N A:THR233 3.9 41.7 1.0
OD1 A:ASP230 4.1 30.8 1.0
CA A:THR233 4.2 39.5 1.0
C A:GLY232 4.3 45.0 1.0
CA A:THR231 4.3 39.4 1.0
N A:PRO234 4.4 32.4 1.0
C A:ASP230 4.4 33.7 1.0
CA A:PRO234 4.4 26.2 1.0
N A:GLY232 4.5 42.9 1.0
CA A:ASP230 4.6 33.3 1.0
CA A:GLY232 4.6 46.9 1.0
CB A:ASP230 4.7 26.7 1.0
O A:GLY232 4.7 47.1 1.0
CB A:THR233 4.7 39.6 1.0
O A:HOH626 4.9 58.3 1.0
C A:PRO234 4.9 32.6 1.0
OG1 A:THR231 5.0 42.6 1.0
N A:HIS235 5.0 26.2 1.0

Reference:

A.Sharma, X.Zhang, W.Dejnirattisai, X.Dai, D.Gong, W.Wongwiwat, S.Duquerroy, A.Rouvinski, M.C.Vaney, P.Guardado-Calvo, A.Haouz, P.England, R.Sun, Z.H.Zhou, J.Mongkolsapaya, G.R.Screaton, F.A.Rey. The Epitope Arrangement on Flavivirus Particles Contributes to Mab C10'S Extraordinary Neutralization Breadth Across Zika and Dengue Viruses Cell(Cambridge,Mass.) 2021.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2021.11.010
Page generated: Thu Jul 18 22:50:10 2024

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