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Calcium in PDB 7bh8: 3H4-Fab Hla-E-VL9 Co-Complex

Protein crystallography data

The structure of 3H4-Fab Hla-E-VL9 Co-Complex, PDB code: 7bh8 was solved by L.C.Walters, D.Rozbesky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.74 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 190.433, 73.695, 159.727, 90, 101.63, 90
R / Rfree (%) 19.5 / 23.2

Calcium Binding Sites:

The binding sites of Calcium atom in the 3H4-Fab Hla-E-VL9 Co-Complex (pdb code 7bh8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the 3H4-Fab Hla-E-VL9 Co-Complex, PDB code: 7bh8:

Calcium binding site 1 out of 1 in 7bh8

Go back to Calcium Binding Sites List in 7bh8
Calcium binding site 1 out of 1 in the 3H4-Fab Hla-E-VL9 Co-Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of 3H4-Fab Hla-E-VL9 Co-Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca302

b:63.3
occ:1.00
O G:SER100 3.0 39.9 1.0
O G:GLY100C 3.1 33.2 1.0
O H:HOH473 3.1 35.4 1.0
N G:TYR98 3.3 34.2 1.0
O G:TYR98 3.3 39.7 1.0
CE2 H:TYR91 3.5 27.9 1.0
CB G:TYR97 3.5 33.8 1.0
O G:HOH552 3.6 35.1 1.0
CA G:TYR97 3.7 39.1 1.0
C G:TYR98 4.0 30.6 1.0
C G:TYR97 4.0 36.4 1.0
C G:GLY100C 4.0 30.2 1.0
CD2 H:TYR91 4.1 28.2 1.0
C G:SER100 4.2 37.8 1.0
CA G:TYR98 4.2 37.0 1.0
CE1 H:TYR32 4.3 33.7 1.0
CD1 H:TYR32 4.5 28.3 1.0
CZ H:TYR91 4.6 28.0 1.0
CA G:TRP100D 4.7 23.8 1.0
CG G:TYR97 4.7 43.0 1.0
OH H:TYR91 4.7 32.0 1.0
N G:TRP100D 4.8 29.5 1.0
CB G:TYR98 4.8 37.5 1.0
N G:SER100 4.8 35.5 1.0
CD2 G:TYR97 4.9 43.4 1.0
N G:GLY100C 5.0 27.5 1.0
O G:HOH571 5.0 43.8 1.0
CA G:GLY100C 5.0 28.5 1.0

Reference:

D.Li, S.Brackenridge, L.C.Walters, O.Swanson, K.Harlos, D.Rozbesky, D.W.Cain, K.Wiehe, R.M.Scearce, M.Barr, Z.Mu, R.Parks, M.Quastel, R.J.Edwards, Y.Wang, W.Rountree, K.O.Saunders, G.Ferrari, P.Borrow, E.Y.Jones, S.M.Alam, M.L.Azoitei, G.M.Gillespie, A.J.Mcmichael, B.F.Haynes. Mouse and Human Antibodies Bind Hla-E-Leader Peptide Complexes and Enhance Nk Cell Cytotoxicity. Commun Biol V. 5 271 2022.
ISSN: ESSN 2399-3642
PubMed: 35347236
DOI: 10.1038/S42003-022-03183-5
Page generated: Thu Jul 18 23:17:32 2024

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