Calcium in PDB 7cgz: Glucose Dehydrogenase

The structure of Glucose Dehydrogenase, PDB code: 7cgz was solved by S.Jia, D.Xu, W.Wang, T.Ran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.94
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	160.622, 44.64, 99.885, 90, 100.1, 90
R / Rfree (%)	20.3 / 23.5

The binding sites of Calcium atom in the Glucose Dehydrogenase (pdb code 7cgz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Glucose Dehydrogenase, PDB code: 7cgz:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Glucose Dehydrogenase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Glucose Dehydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:62.4 occ:1.00 O A:HOH536 2.4 41.4 1.0 O A:TYR227 2.4 43.1 1.0 OE1 A:GLU217 2.5 45.2 1.0 O A:HOH505 2.7 54.9 1.0 HB3 A:TYR227 2.8 36.0 1.0 CD A:GLU217 3.2 46.5 1.0 OE2 A:GLU217 3.3 47.5 1.0 C A:TYR227 3.5 44.0 1.0 HD21 A:ASN219 3.5 37.0 0.0 HG3 A:PRO257 3.6 49.7 1.0 HD2 A:TYR227 3.6 41.0 1.0 HD2 A:PRO212 3.7 56.9 1.0 CB A:TYR227 3.7 36.0 1.0 HA A:TYR227 3.8 46.3 1.0 CA A:TYR227 3.9 46.3 1.0 HG3 A:PRO212 4.0 59.3 1.0 HD3 A:PRO257 4.0 51.9 1.0 O A:GLU255 4.1 58.0 1.0 HG2 A:PRO212 4.2 59.3 1.0 HD3 A:PRO212 4.2 56.9 1.0 ND2 A:ASN219 4.2 37.0 1.0 CD A:PRO212 4.2 56.9 1.0 OD1 A:ASN219 4.3 41.9 1.0 HB2 A:TYR227 4.3 36.0 1.0 CG A:PRO212 4.3 59.3 1.0 HA3 A:GLY228 4.4 51.2 1.0 CD2 A:TYR227 4.4 41.0 1.0 CG A:PRO257 4.5 49.7 1.0 CG A:TYR227 4.6 37.4 1.0 CG A:GLU217 4.6 31.5 1.0 N A:GLY228 4.6 46.7 1.0 CG A:ASN219 4.7 38.6 1.0 CD A:PRO257 4.7 51.9 1.0 HG3 A:GLU217 4.7 31.5 1.0 HA A:GLN256 4.7 60.3 1.0 HD22 A:ASN219 4.9 37.0 0.0 HG2 A:PRO257 4.9 49.7 1.0 CA A:GLY228 5.0 51.2 1.0

Calcium binding site 2 out of 2 in the Glucose Dehydrogenase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Glucose Dehydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:46.5 occ:1.00 OE1 B:GLU217 2.3 41.6 1.0 O B:TYR227 2.4 40.7 1.0 O B:HOH528 2.6 39.7 1.0 OE2 B:GLU217 2.9 44.6 1.0 CD B:GLU217 2.9 42.4 1.0 HB3 B:TYR227 3.4 36.4 1.0 C B:TYR227 3.6 41.1 1.0 HD21 B:ASN219 3.9 38.0 0.0 HD3 B:PRO257 3.9 42.6 1.0 HA3 B:GLY228 4.1 46.8 1.0 H B:TRP229 4.1 48.1 1.0 CB B:TYR227 4.3 36.4 1.0 CA B:TYR227 4.4 41.5 1.0 CG B:GLU217 4.4 45.8 1.0 HB2 B:TRP229 4.5 46.2 1.0 HA B:TYR227 4.5 41.5 1.0 O B:ALA232 4.5 52.8 1.0 OE1 B:GLU209 4.5 35.0 1.0 O B:GLY189 4.6 39.9 1.0 OD1 B:ASN219 4.6 37.2 1.0 HD2 B:TYR227 4.6 36.3 1.0 N B:GLY228 4.6 42.4 1.0 O B:GLU255 4.6 46.5 1.0 ND2 B:ASN219 4.6 38.0 1.0 N B:TRP229 4.6 48.1 1.0 HB2 B:TYR227 4.7 36.4 1.0 CA B:GLY228 4.7 46.8 1.0 HB3 B:PRO257 4.7 40.3 1.0 HG3 B:GLU217 4.8 45.8 1.0 HB2 B:GLU217 4.8 42.4 1.0 CD B:PRO257 4.8 42.6 1.0 HB3 B:ALA232 4.9 57.6 1.0 CD B:GLU209 4.9 40.8 1.0 HG3 B:PRO257 4.9 46.2 1.0 HB3 B:GLU217 5.0 42.4 1.0 HG2 B:GLU217 5.0 45.8 1.0 HA B:THR233 5.0 55.5 1.0

S.Jia, D.Xu, W.Wang, T.Ran. Structure of Glucose Dehydrogenase at 1.33 Angstroms To Be Published.